Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15737 Brassica carinata HOM05D001765 ORTHO05D003527 4.0e-63 244.6 124 100.0
C06p48050 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-46 189.9 158 67.7
BolC6t38486H Brassica oleracea HOM05D001765 ORTHO05D003527 9.4e-44 180.3 163 68.7
BolC6t39840H Brassica oleracea HOM05D001765 ORTHO05D003527 2.1e-43 179.1 158 65.2
Sp5g29140 Schrenkiella parvula HOM05D001765 ORTHO05D003527 6.1e-43 177.6 157 67.5
CARHR067050 Cardamine hirsuta HOM05D001765 ORTHO05D003527 6.7e-42 174.1 157 64.3
Carub.0002s2071 Capsella rubella HOM05D001765 ORTHO05D003527 7.4e-41 170.6 157 63.7
AT1G73940 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 8.2e-40 167.2 158 64.6
Thhalv10019277m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 1.1e-39 166.8 158 62.0
AL2G33770 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 7.7e-38 160.6 158 62.0
C06p33710 Brassica napus HOM05D001765 ORTHO05D003527 2.9e-37 158.7 160 61.9
A07p39780 Brassica napus HOM05D001765 ORTHO05D003527 2.6e-33 145.6 160 57.5
BraA07t31525Z Brassica rapa HOM05D001765 ORTHO05D003527 3.7e-32 141.7 161 57.1
Aa31LG4G4230 Aethionema arabicum HOM05D001765 ORTHO05D003527 5.3e-31 137.9 179 50.3
BraA07t30598Z Brassica rapa HOM05D001765 ORTHO05D003527 4.0e-26 121.7 124 61.3
THA.LOC104823621 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 7.5e-25 117.5 156 48.1
Thecc.03G214000 Theobroma cacao HOM05D001765 ORTHO05D003527 1.4e-23 113.2 130 49.2
TWI60G1724 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 7.0e-23 110.9 158 43.0
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 1.2e-22 110.2 156 41.0
Cpa.g.sc37.116 Carica papaya HOM05D001765 ORTHO05D003527 5.9e-22 107.8 159 42.1
Gohir.A12G243600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.9e-22 107.8 163 42.3
Manes.01G000550 Manihot esculenta HOM05D001765 ORTHO05D003527 7.7e-22 107.5 131 47.3
FAN18G1217 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.3e-21 106.7 90 60.0
GSVIVG01019710001 Vitis vinifera HOM05D001765 ORTHO05D003527 1.3e-21 106.7 154 44.2
Duzib084G1229 Durio zibethinus HOM05D001765 ORTHO05D003527 2.2e-21 105.9 130 46.2
Gorai.008G262200 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.9e-21 105.5 163 41.7
Gohir.D12G244600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.8e-21 105.1 163 41.1
Duzib068G1454 Durio zibethinus HOM05D001765 ORTHO05D003527 5.0e-21 104.8 156 41.7
COL.COLO4_10860 Corchorus olitorius HOM05D001765 ORTHO05D003527 1.1e-20 103.6 130 44.6
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 1.5e-20 103.2 126 45.2
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 3.2e-20 102.1 124 47.6
CiPaw.11G106600 Carya illinoinensis HOM05D001765 ORTHO05D003527 4.2e-20 101.7 156 42.3
Aqoxy5G04386 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 9.4e-20 100.5 124 45.2
RcHm_v2.0_Chr7g0188041 Rosa chinensis HOM05D001765 ORTHO05D003527 9.4e-20 100.5 156 40.4
Atru.chr9.1818 Acer truncatum HOM05D001765 ORTHO05D003527 1.6e-19 99.8 139 41.0
Prupe.5G136900 Prunus persica HOM05D001765 ORTHO05D003527 1.6e-19 99.8 156 41.0
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 3.6e-19 98.6 156 42.3
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 8.0e-19 97.4 154 39.6
QL93p2012_0027 Quercus lobata HOM05D001765 ORTHO05D003527 1.0e-18 97.1 158 41.1
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 1.4e-18 96.7 156 41.0
PSO063G6238 Papaver somniferum HOM05D001765 ORTHO05D003527 1.8e-18 96.3 124 45.2
PSO782G3477 Papaver somniferum HOM05D001765 ORTHO05D003527 4.0e-18 95.1 124 44.4
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.5e-17 93.2 148 38.5
Ciclev10022684m.g Citrus clementina HOM05D001765 ORTHO05D003527 1.5e-17 93.2 131 41.2
FvH4_5g10193 Fragaria vesca HOM05D001765 ORTHO05D003527 2.0e-17 92.8 123 44.7
Lj2A148G64 Lonicera japonica HOM05D001765 ORTHO05D003527 2.0e-17 92.8 75 58.7
FAN04G1154 Fragaria x ananassa HOM05D000258 ORTHO05D000153 3.4e-17 92.0 152 42.1
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 5.7e-17 91.3 125 40.8
SGA_v2.0_scaffold20G09260 Striga asiatica HOM05D001765 ORTHO05D003527 5.7e-17 91.3 139 41.0
MD06G1126400 Malus domestica HOM05D001765 ORTHO05D003527 9.8e-17 90.5 156 37.8
Potri.001G453400 Populus trichocarpa HOM05D001765 ORTHO05D003527 1.7e-16 89.7 155 37.4
Haze_03593 Corylus avellana HOM05D001765 ORTHO05D003527 2.8e-16 89.0 72 56.9
Sed0027749 Sechium edule HOM05D001765 ORTHO05D003527 2.8e-16 89.0 154 42.2
ClCG01G001250 Citrullus lanatus HOM05D001765 ORTHO05D003527 4.8e-16 88.2 149 38.9
Migut.E00773 Erythranthe guttata HOM05D001765 ORTHO05D003527 4.8e-16 88.2 134 38.8
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.3e-16 87.8 100 44.0
CANSAT21G2548 Cannabis sativa HOM05D001765 ORTHO05D003527 8.3e-16 87.4 127 44.1
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 8.3e-16 87.4 156 35.9
QL02p026712 Quercus lobata HOM05D001765 ORTHO05D003527 1.1e-15 87.0 74 55.4
Sabra16G0306500 Salix brachista HOM05D001765 ORTHO05D003527 1.1e-15 87.0 155 38.7
QL93p2012_0004 Quercus lobata HOM05D001765 ORTHO05D003527 1.4e-15 86.7 73 56.2
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 2.4e-15 85.9 152 36.8
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 2.4e-15 85.9 104 44.2
unitig_52.g17201 Utricularia gibba HOM05D000742 ORTHO05D000924 1.2e-14 83.6 121 40.5
HPP92_020738 Vanilla planifolia HOM05D001765 ORTHO05D003527 1.6e-14 83.2 158 36.1
Nitab4.5_0000450g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 2.0e-14 82.8 103 44.7
EL10Ac9g22070 Beta vulgaris HOM05D001765 ORTHO05D003527 2.7e-14 82.4 151 37.1
FAN13G1501 Fragaria x ananassa HOM05D000258 ORTHO05D000153 2.7e-14 82.4 137 38.7
MSTRG.2000 Avicennia marina HOM05D001765 ORTHO05D003527 4.5e-14 81.6 117 43.6
Nitab4.5_0006317g0030 Nicotiana tabacum HOM05D001765 ORTHO05D003527 5.9e-14 81.3 126 39.7
AUR62027108 Chenopodium quinoa HOM05D001765 ORTHO05D003527 7.7e-14 80.9 124 40.3
CsaV3_5G001370 Cucumis sativus L. HOM05D001765 ORTHO05D003527 1.3e-13 80.1 154 39.0
AUR62012884 Chenopodium quinoa HOM05D001765 ORTHO05D003527 1.7e-13 79.7 124 40.3
Hund00380 Selenicereus undatus HOM05D001765 ORTHO05D003527 1.7e-13 79.7 152 36.8
MELO3C005810.2 Cucumis melo HOM05D001765 ORTHO05D003527 5.0e-13 78.2 156 36.5
SalBow1G2231 Salvia bowleyana HOM05D001765 ORTHO05D003527 5.0e-13 78.2 125 39.2
Peaxi162Scf00779g00211 Petunia axillaris HOM05D001765 ORTHO05D003527 6.5e-13 77.8 110 41.8
Sed0026089 Sechium edule HOM05D001765 ORTHO05D003527 1.1e-12 77.0 147 38.1
CDE11G1166 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 3.2e-12 75.5 66 57.6
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 8.0e-11 70.9 60 58.3
Zm00001eb210620 Zea mays HOM05D001765 ORTHO05D003527 4.0e-10 68.6 112 35.7
Ah.01g023930 Amaranthus hybridus HOM05D001765 ORTHO05D003527 5.2e-10 68.2 73 45.2
Os03g0852500 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 6.8e-10 67.8 160 32.5
Oeu020469.1 Olea europaea HOM05D001765 ORTHO05D003527 1.7e-08 63.2 51 56.9
Cfa010658 Carpinus fangiana HOM05D001765 ORTHO05D003527 2.2e-08 62.8 56 50.0
Sopen02g013530 Solanum pennellii HOM05D001765 ORTHO05D003527 2.2e-08 62.8 69 43.5
Solyc02g062530.3 Solanum lycopersicum HOM05D001765 ORTHO05D003527 3.7e-08 62.0 69 43.5
PGSC0003DMG400015496 Solanum tuberosum HOM05D001765 ORTHO05D003527 4.9e-08 61.6 64 46.9
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea HOM05D001765 ORTHO05D003527 1.1e-07 60.5 65 40.0
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea HOM05D001765 ORTHO05D003527 1.1e-07 60.5 65 40.0
Oeu002033.1 Olea europaea HOM05D001765 ORTHO05D003527 1.1e-07 60.5 43 58.1
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 1.4e-07 60.1 61 41.0
AL8G23120 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
AT5G49410 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
BcaB07g34155 Brassica carinata HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.8e-07 59.7 43 58.1
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
Carub.0008s0929 Capsella rubella HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
CARHR182120 Cardamine hirsuta HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
Eucgr.A00850 Eucalyptus grandis HOM05D001765 ORTHO05D003527 1.8e-07 59.7 61 42.6
Thhalv10005097m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
MD15G1252600 Malus domestica HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 55.8
Sp2g19750 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
SpUn0021_0100 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.8e-07 59.7 43 58.1
ATR1125G025 Amborella trichopoda HOM05D001765 ORTHO05D003527 3.1e-07 58.9 54 48.1
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea HOM05D001765 ORTHO05D003527 3.1e-07 58.9 65 40.0
Cpa.g.sc6.177 Carica papaya HOM05D001765 ORTHO05D003527 3.1e-07 58.9 65 43.1
Aa31LG11G8000 Aethionema arabicum HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 55.8
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 53.5
Gohir.D04G192700 Gossypium hirsutum HOM05D001765 ORTHO05D003527 4.1e-07 58.5 40 60.0
Nitab4.5_0000136g0160 Nicotiana tabacum HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 55.8
Nitab4.5_0009648g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 55.8
Peaxi162Scf00207g01134 Petunia axillaris HOM05D001765 ORTHO05D003527 4.1e-07 58.5 57 49.1
Peaxi162Scf01385g00023 Petunia axillaris HOM05D001765 ORTHO05D003527 4.1e-07 58.5 57 49.1
Prupe.7G161600 Prunus persica HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 55.8
THA.LOC104826037 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 4.1e-07 58.5 43 55.8
Dinv05607 Davidia involucrata HOM05D001765 ORTHO05D003527 5.4e-07 58.2 43 53.5
Dinv10225 Davidia involucrata HOM05D001765 ORTHO05D003527 5.4e-07 58.2 43 53.5
Duzib147G0794 Durio zibethinus HOM05D001765 ORTHO05D003527 5.4e-07 58.2 43 55.8
Gohir.D12G000200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.4e-07 58.2 43 53.5
Thecc.04G047100 Theobroma cacao HOM05D001765 ORTHO05D003527 5.4e-07 58.2 43 55.8
Actinidia19217 Actinidia chinensis HOM05D001765 ORTHO05D003527 7.0e-07 57.8 43 53.5
CDE04G0335 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.0e-07 57.8 50 46.0
CDE07G0806 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.0e-07 57.8 50 46.0
Cc07_g11660 Coffea canephora HOM05D001765 ORTHO05D003527 7.0e-07 57.8 43 53.5
Gohir.A01G232040 Gossypium hirsutum HOM05D001765 ORTHO05D003527 7.0e-07 57.8 40 57.5
Gorai.004G000500 Gossypium raimondii HOM05D001765 ORTHO05D003527 7.0e-07 57.8 43 53.5
MBI18_g05082_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 7.0e-07 57.8 50 46.0
SalBow8G1820 Salvia bowleyana HOM05D001765 ORTHO05D003527 7.0e-07 57.8 43 53.5
TWI73G1042 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 7.0e-07 57.8 43 53.5
Gohir.1Z049421 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-07 57.4 40 57.5
Gohir.1Z049644 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-07 57.4 40 57.5
Gohir.A08G000008 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-07 57.4 40 57.5
Gohir.D03G000300 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.2e-07 57.4 43 53.5
Gorai.003G000600 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.2e-07 57.4 43 53.5
Gorai.006G275100 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.2e-07 57.4 40 57.5
Gorai.007G380100 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.2e-07 57.4 40 57.5
TWI09G0332 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 9.2e-07 57.4 43 53.5
vmacro17720 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 9.2e-07 57.4 54 48.1
vmacro22958 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 9.2e-07 57.4 54 48.1
Aqoxy5G01550 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 1.2e-06 57.0 52 46.2
Gohir.D10G000101 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.2e-06 57.0 40 55.0
Lj1g0003490 Lotus japonicus HOM05D001765 ORTHO05D003527 1.2e-06 57.0 56 46.4
Lalb_Chr10g0093061 Lupinus albus HOM05D001765 ORTHO05D003527 1.2e-06 57.0 47 51.1
MD02G1139500 Malus domestica HOM05D001765 ORTHO05D003527 1.2e-06 57.0 43 53.5
Rhsim08G0122600 Rhododendron simsii HOM05D001765 ORTHO05D003527 1.2e-06 57.0 43 55.8
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 1.6e-06 56.6 43 53.5
Manes.02G222800 Manihot esculenta HOM05D001765 ORTHO05D003527 1.6e-06 56.6 43 53.5
Ca_06451_v3 Cicer arietinum L. HOM05D001765 ORTHO05D003527 2.0e-06 56.2 43 51.2
Gorai.N020000 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.0e-06 56.2 40 55.0
Lalb_Chr08g0235841 Lupinus albus HOM05D001765 ORTHO05D003527 2.0e-06 56.2 43 51.2
Medtr5g097230 Medicago truncatula HOM05D001765 ORTHO05D003527 2.0e-06 56.2 43 51.2
Psat2g004640 Pisum sativum HOM05D001765 ORTHO05D003527 2.0e-06 56.2 43 51.2
RcHm_v2.0_Chr2g0100461 Rosa chinensis HOM05D001765 ORTHO05D003527 2.0e-06 56.2 57 45.6
TPR.G1302 Trifolium pratense HOM05D001765 ORTHO05D003527 2.0e-06 56.2 43 51.2
Atru.chr3.680 Acer truncatum HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 51.2
Atru.chr3.726 Acer truncatum HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 51.2
CANSAT01G1346 Cannabis sativa HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 53.5
Cfa006911 Carpinus fangiana HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 53.5
Gohir.A07G233400 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 53.5
Phvul.008G284700 Phaseolus vulgaris HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 48.8
PGR119G0836 Punica granatum HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 53.5
QL06p035070 Quercus lobata HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 53.5
VMungo0647G1062 Vigna mungo HOM05D001765 ORTHO05D003527 2.7e-06 55.8 43 48.8
Sabra05G0098000 Salix brachista HOM05D001765 ORTHO05D003527 3.5e-06 55.5 43 53.5
Hund05221 Selenicereus undatus HOM05D001765 ORTHO05D003527 3.5e-06 55.5 43 51.2
GSVIVG01018876001 Vitis vinifera HOM05D001765 ORTHO05D003527 3.5e-06 55.5 43 51.2
Actinidia26093 Actinidia chinensis HOM05D001765 ORTHO05D003527 4.5e-06 55.1 40 55.0
Glyma.14G008500 Glycine max HOM05D001765 ORTHO05D003527 4.5e-06 55.1 43 48.8
Gohir.A10G243200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 4.5e-06 55.1 43 51.2
Gorai.010G246100 Gossypium raimondii HOM05D001765 ORTHO05D003527 4.5e-06 55.1 40 55.0
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea HOM05D001765 ORTHO05D003527 5.9e-06 54.7 43 51.2
ClCG07G008720 Citrullus lanatus HOM05D001765 ORTHO05D003527 5.9e-06 54.7 43 48.8
Nn1g00490 Nelumbo nucifera HOM05D001765 ORTHO05D003527 5.9e-06 54.7 32 75.0
Potri.005G118900 Populus trichocarpa HOM05D001765 ORTHO05D003527 5.9e-06 54.7 43 53.5
Sed0024924 Sechium edule HOM05D001765 ORTHO05D003527 5.9e-06 54.7 43 48.8
unitig_899.g14639 Utricularia gibba HOM05D001765 ORTHO05D003527 7.7e-06 54.3 51 41.2


User provided reference genes

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