Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-113 412.5 211 100.0
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 3.0e-98 362.1 212 88.7
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 4.3e-97 358.2 214 87.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 3.5e-91 338.6 213 85.4
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 3.5e-91 338.6 213 85.4
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 3.5e-91 338.6 213 85.4
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 6.6e-90 334.3 212 83.5
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 8.6e-90 334.0 213 83.1
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.9e-89 332.8 213 84.0
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 5.6e-89 331.3 212 83.0
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.8e-87 326.2 214 81.8
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-86 323.2 216 82.4
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-86 323.2 216 82.4
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 2.6e-86 322.4 217 80.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 9.9e-86 320.5 212 80.7
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.9e-85 318.2 214 79.9
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 5.4e-84 314.7 216 79.2
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.7e-82 309.7 217 77.4
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.9e-73 279.6 215 71.2
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 4.9e-69 265.0 213 72.3
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 2.1e-67 259.6 211 66.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.3e-58 229.6 214 61.7
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 7.9e-43 177.9 98 91.8
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 7.9e-43 177.9 98 91.8
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 7.9e-43 177.9 98 91.8
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.8e-42 176.8 213 51.6
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 3.9e-42 175.6 189 55.6
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 5.1e-42 175.3 211 53.1
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 4.3e-41 172.2 215 50.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 5.7e-41 171.8 205 53.2
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.7e-41 171.8 179 55.9
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 7.4e-41 171.4 219 53.9
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 9.7e-41 171.0 213 48.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.3e-40 170.6 178 57.9
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 2.2e-40 169.9 179 54.7
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.1e-39 167.5 170 55.9
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.8e-39 166.8 223 48.0
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 4.1e-39 165.6 185 55.1
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 9.0e-39 164.5 227 49.8
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.2e-38 164.1 222 51.4
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.5e-38 163.7 214 53.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 3.4e-38 162.5 174 54.0
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.4e-38 162.5 213 48.8
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 7.7e-38 161.4 184 53.8
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 7.7e-38 161.4 177 55.9
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 1.3e-37 160.6 220 49.5
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.7e-37 160.2 211 48.8
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.7e-37 160.2 163 57.7
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 3.8e-37 159.1 214 48.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.1e-36 157.5 179 55.9
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.9e-36 156.8 189 47.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 2.5e-36 156.4 160 55.0
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 4.2e-36 155.6 212 47.6
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 5.5e-36 155.2 215 46.5
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 7.2e-36 154.8 208 49.5
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 9.4e-36 154.5 215 49.8
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 9.4e-36 154.5 160 56.9
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 9.4e-36 154.5 214 48.1
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 2.1e-35 153.3 161 56.5
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.1e-35 153.3 215 49.8
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.7e-35 152.9 215 48.8
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.6e-35 152.5 213 50.2
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.6e-35 152.1 215 48.8
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 6.1e-35 151.8 195 49.2
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 7.9e-35 151.4 216 46.3
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 3.0e-34 149.4 215 45.6
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 5.1e-34 148.7 176 50.0
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 6.7e-34 148.3 216 49.5
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 6.7e-34 148.3 214 48.1
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.1e-33 147.5 213 44.6
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.5e-33 147.1 216 46.8
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.0e-33 146.7 217 46.5
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.0e-33 146.7 221 46.2
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.3e-33 146.0 204 46.1
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 5.7e-33 145.2 96 72.9
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 5.7e-33 145.2 192 49.0
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 7.4e-33 144.8 215 47.4
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.4e-33 144.8 215 47.4
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.3e-32 144.1 213 46.5
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.7e-32 143.7 221 45.2
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.7e-32 143.7 217 45.6
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 3.7e-32 142.5 96 70.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 3.7e-32 142.5 184 51.1
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 4.8e-32 142.1 187 46.5
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 8.2e-32 141.4 196 50.5
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.8e-31 140.2 165 49.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.4e-31 139.8 165 49.7
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 4.1e-31 139.0 187 49.2
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 9.1e-31 137.9 184 48.9
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 3.4e-30 136.0 157 52.9
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 3.8e-29 132.5 96 67.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.1e-28 131.0 126 57.1
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.4e-28 130.6 246 43.1
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 7.2e-28 128.3 184 42.4
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 9.4e-28 127.9 206 42.2
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.1e-27 126.7 222 43.2
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.1e-27 126.7 184 42.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.4e-26 124.0 216 39.4
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.8e-26 123.6 222 38.7
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 5.1e-26 122.1 121 52.1
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 8.8e-26 121.3 182 40.7
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 8.8e-26 121.3 190 44.2
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.5e-25 120.6 254 37.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.5e-25 120.6 192 44.3
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.0e-25 120.2 212 40.1
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 4.4e-25 119.0 122 53.3
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.2e-24 114.8 203 37.4
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.1e-23 114.4 151 46.4
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.5e-22 110.5 205 38.5
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 5.9e-22 108.6 211 38.9
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.2e-21 106.7 69 81.2
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.2e-21 106.7 87 59.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.0e-21 105.5 199 42.2
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.7e-19 99.8 100 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.7e-19 99.8 100 55.0
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 9.7e-17 91.3 107 45.8
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 4.1e-15 85.9 71 71.8
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 5.3e-15 85.5 89 42.7
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 1.2e-14 84.3 59 83.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.5e-14 82.4 59 69.5
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.5e-14 82.4 59 69.5
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.3e-13 80.9 168 41.7
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 5.5e-12 75.5 63 65.1
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 7.2e-12 75.1 87 48.3
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 7.2e-12 75.1 87 48.3
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.8e-10 70.5 40 72.5
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.8e-10 68.2 130 42.3
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.6e-09 66.6 131 35.1
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.1e-07 59.7 68 47.1


User provided reference genes

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