Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15612 Brassica carinata HOM05D001006 ORTHO05D000868 2.5e-62 241.9 120 100.0
BcaB06g28412 Brassica carinata HOM05D001006 ORTHO05D000868 2.0e-27 125.9 133 64.7
BcaB06g29639 Brassica carinata HOM05D001006 ORTHO05D000868 4.5e-27 124.8 107 72.0
BcaB01g04326 Brassica carinata HOM05D001006 ORTHO05D000868 7.7e-27 124.0 105 72.4
BcaC01g05210 Brassica carinata HOM05D000150 ORTHO05D000108 1.1e-25 120.2 107 71.0
BcaB07g33834 Brassica carinata HOM05D001006 ORTHO05D000868 2.4e-20 102.4 94 61.7
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 1.7e-18 96.3 80 66.2
BcaB01g02093 Brassica carinata HOM05D001006 ORTHO05D000868 1.1e-17 93.6 108 59.3
BcaB06g26691 Brassica carinata HOM05D001006 ORTHO05D000868 4.0e-15 85.1 71 70.4
BcaB05g24189 Brassica carinata HOM05D001006 ORTHO05D000868 5.2e-15 84.7 71 70.4
BcaB05g24325 Brassica carinata HOM05D001006 ORTHO05D000868 5.2e-15 84.7 69 63.8
BcaB08g36602 Brassica carinata HOM05D001006 ORTHO05D000868 3.4e-14 82.0 71 69.0
BcaB05g23089 Brassica carinata HOM05D001006 ORTHO05D000868 2.2e-13 79.3 71 66.2
BcaB07g30578 Brassica carinata HOM05D001006 ORTHO05D000868 2.4e-12 75.9 88 60.2
A01p17010 Brassica napus HOM05D001006 ORTHO05D000868 2.9e-10 68.9 62 59.7
BraA01t01657Z Brassica rapa HOM05D001006 ORTHO05D000868 2.9e-10 68.9 62 59.7
BcaB01g00994 Brassica carinata HOM05D001006 ORTHO05D094586 5.0e-10 68.2 67 58.2
BcaB05g22319 Brassica carinata HOM05D001006 ORTHO05D000868 5.0e-10 68.2 55 65.5
BcaC09g50746 Brassica carinata HOM05D001006 ORTHO05D000868 1.5e-09 66.6 62 58.1
BcaNung04115 Brassica carinata HOM05D001006 ORTHO05D000868 1.5e-09 66.6 62 58.1
C01p21330 Brassica napus HOM05D001006 ORTHO05D000868 1.5e-09 66.6 62 58.1
CARHR233220 Cardamine hirsuta HOM05D001006 ORTHO05D000868 1.9e-09 66.2 62 58.1
Thhalv10025307m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 2.5e-09 65.9 62 56.5
Sp7g23800 Schrenkiella parvula HOM05D001006 ORTHO05D000868 4.2e-09 65.1 62 54.8
AT4G25770 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 1.2e-08 63.5 62 56.5
AL7G27270 Arabidopsis lyrata HOM05D001006 ORTHO05D000868 3.6e-08 62.0 66 51.5
Carub.0007s1519 Capsella rubella HOM05D001006 ORTHO05D000868 1.4e-07 60.1 62 54.8
Lalb_Chr08g0242851 Lupinus albus HOM05D001006 ORTHO05D000868 1.4e-07 60.1 68 47.1
Nn6g34566 Nelumbo nucifera HOM05D001006 ORTHO05D000868 1.8e-07 59.7 73 45.2
TWI36G1272 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 1.8e-07 59.7 91 42.9
Ciclev10001340m.g Citrus clementina HOM05D001006 ORTHO05D000868 2.3e-07 59.3 64 50.0
Os08g0447300 Oryza sativa ssp. japonica HOM05D001006 ORTHO05D000868 2.3e-07 59.3 83 44.6
Zm00001eb040870 Zea mays HOM05D001006 ORTHO05D000868 2.3e-07 59.3 83 44.6
Manes.18G051900 Manihot esculenta HOM05D001006 ORTHO05D000868 3.0e-07 58.9 72 47.2
Nn8g40400 Nelumbo nucifera HOM05D001006 ORTHO05D000868 3.0e-07 58.9 60 53.3
Aqoxy7G03139 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 4.0e-07 58.5 61 54.1
Prupe.1G091600 Prunus persica HOM05D001006 ORTHO05D000868 4.0e-07 58.5 62 51.6
SalBow7G4547 Salvia bowleyana HOM05D001006 ORTHO05D000868 4.0e-07 58.5 67 49.3
THA.LOC104811811 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 4.0e-07 58.5 62 48.4
TPR.G12420 Trifolium pratense HOM05D001006 ORTHO05D000868 4.0e-07 58.5 64 48.4
Thhalv10007805m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 5.2e-07 58.2 63 49.2
TWI12G0428 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 5.2e-07 58.2 64 50.0
arahy.Tifrunner.gnm1.ann1.USU7SK Arachis hypogaea HOM05D001006 ORTHO05D000868 6.8e-07 57.8 64 46.9
Haze_21937 Corylus avellana HOM05D001006 ORTHO05D000868 6.8e-07 57.8 61 50.8
Sp1g08690 Schrenkiella parvula HOM05D001006 ORTHO05D000868 6.8e-07 57.8 63 50.8
Atru.chr13.903 Acer truncatum HOM05D001006 ORTHO05D000868 8.9e-07 57.4 64 46.9
CANSAT80G1443 Cannabis sativa HOM05D001006 ORTHO05D000868 8.9e-07 57.4 67 49.3
Carub.0001s0946 Capsella rubella HOM05D001006 ORTHO05D000868 8.9e-07 57.4 63 49.2
Dinv44915 Davidia involucrata HOM05D001006 ORTHO05D000868 8.9e-07 57.4 64 48.4
MD08G1108500 Malus domestica HOM05D001006 ORTHO05D000868 8.9e-07 57.4 60 50.0
Ca_15563_v3 Cicer arietinum L. HOM05D001006 ORTHO05D000868 1.2e-06 57.0 64 46.9
Lj4A78T27 Lonicera japonica HOM05D001006 ORTHO05D000868 1.2e-06 57.0 64 48.4
QL02p096914 Quercus lobata HOM05D001006 ORTHO05D000868 1.2e-06 57.0 67 46.3
RcHm_v2.0_Chr6g0306871 Rosa chinensis HOM05D001006 ORTHO05D000868 1.2e-06 57.0 62 50.0
TWI56G0285 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 1.2e-06 57.0 60 51.7
Aqoxy6G01534 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 1.5e-06 56.6 65 46.2
arahy.Tifrunner.gnm1.ann1.9AD5I3 Arachis hypogaea HOM05D001006 ORTHO05D000868 1.5e-06 56.6 64 45.3
Glyma.04G087400 Glycine max HOM05D001006 ORTHO05D000868 1.5e-06 56.6 68 45.6
Glyma.06G089100 Glycine max HOM05D001006 ORTHO05D000868 1.5e-06 56.6 68 45.6
Gohir.D02G087400 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.5e-06 56.6 64 50.0
Gorai.005G098000 Gossypium raimondii HOM05D001006 ORTHO05D000868 1.5e-06 56.6 64 50.0
Hma1.2p1_1078F.1_g254790 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 1.5e-06 56.6 64 50.0
Gohir.A02G079500 Gossypium hirsutum HOM05D001006 ORTHO05D000868 2.0e-06 56.2 64 50.0
Medtr3g110530 Medicago truncatula HOM05D001006 ORTHO05D000868 2.0e-06 56.2 64 46.9
Phvul.009G113000 Phaseolus vulgaris HOM05D001006 ORTHO05D000868 2.0e-06 56.2 68 44.1
Psat5g020080 Pisum sativum HOM05D001006 ORTHO05D000868 2.0e-06 56.2 64 46.9
AT1G10040 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 2.6e-06 55.8 63 47.6
arahy.Tifrunner.gnm1.ann1.QRAR3K Arachis hypogaea HOM05D001006 ORTHO05D000868 2.6e-06 55.8 64 46.9
MSTRG.27219 Avicennia marina HOM05D001006 ORTHO05D000868 2.6e-06 55.8 64 48.4
ECA247G0492 Erigeron canadensis HOM05D001006 ORTHO05D000868 2.6e-06 55.8 62 48.4
Eucgr.C02420 Eucalyptus grandis HOM05D001006 ORTHO05D000868 2.6e-06 55.8 62 48.4
FAN15G1652 Fragaria x ananassa HOM05D001006 ORTHO05D000868 2.6e-06 55.8 62 48.4
Sabra02G0089200 Salix brachista HOM05D001006 ORTHO05D000868 2.6e-06 55.8 76 42.1
Actinidia19279 Actinidia chinensis HOM05D001006 ORTHO05D000868 3.4e-06 55.5 67 43.3
MD15G1089000 Malus domestica HOM05D001006 ORTHO05D000868 3.4e-06 55.5 60 48.3
Nitab4.5_0008009g0010 Nicotiana tabacum HOM05D001006 ORTHO05D000868 3.4e-06 55.5 63 52.4
Actinidia13609 Actinidia chinensis HOM05D001006 ORTHO05D000868 4.4e-06 55.1 54 50.0
Cfa013394 Carpinus fangiana HOM05D001006 ORTHO05D000868 4.4e-06 55.1 61 49.2
Lj1g0007247 Lotus japonicus HOM05D001006 ORTHO05D000868 4.4e-06 55.1 64 45.3
Nitab4.5_0001614g0150 Nicotiana tabacum HOM05D001006 ORTHO05D000868 4.4e-06 55.1 63 52.4
Oeu000748.2 Olea europaea HOM05D001006 ORTHO05D000868 4.4e-06 55.1 60 50.0
Sed0027619 Sechium edule HOM05D001006 ORTHO05D000868 4.4e-06 55.1 66 50.0
TAR381G1676 Trochodendron aralioides HOM05D001006 ORTHO05D000868 4.4e-06 55.1 64 48.4
VMungo1309G0383 Vigna mungo HOM05D001006 ORTHO05D000868 4.4e-06 55.1 68 41.2
MSTRG.24398 Avicennia marina HOM05D001006 ORTHO05D000868 5.7e-06 54.7 65 44.6
CAN.G416.44 Capsicum annuum HOM05D001006 ORTHO05D000868 5.7e-06 54.7 63 46.0
Cpa.g.sc160.17 Carica papaya HOM05D001006 ORTHO05D000868 5.7e-06 54.7 65 46.2
Cfa013526 Carpinus fangiana HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
Ca_12322_v3 Cicer arietinum L. HOM05D001006 ORTHO05D000868 5.7e-06 54.7 102 35.3
DCAR_019340 Daucus carota HOM05D001006 ORTHO05D000868 5.7e-06 54.7 62 46.8
DCAR_020041 Daucus carota HOM05D001006 ORTHO05D000868 5.7e-06 54.7 63 42.9
ECA236G2292 Erigeron canadensis HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 52.5
Eucgr.F02203 Eucalyptus grandis HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 50.8
FvH4_2g35100 Fragaria vesca HOM05D001006 ORTHO05D000868 5.7e-06 54.7 62 48.4
FAN07G1537 Fragaria x ananassa HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
FAN20G2370 Fragaria x ananassa HOM05D001006 ORTHO05D000868 5.7e-06 54.7 62 48.4
FAN22G2058 Fragaria x ananassa HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
FAN27G0337 Fragaria x ananassa HOM05D001006 ORTHO05D000868 5.7e-06 54.7 62 48.4
Gohir.A05G213400 Gossypium hirsutum HOM05D001006 ORTHO05D000868 5.7e-06 54.7 64 45.3
MD13G1265600 Malus domestica HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
RcHm_v2.0_Chr4g0403551 Rosa chinensis HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
SGA_v2.0_scaffold60G20813 Striga asiatica HOM05D001006 ORTHO05D000868 5.7e-06 54.7 61 49.2
Aa31LG1G4860 Aethionema arabicum HOM05D001006 ORTHO05D000868 7.5e-06 54.3 63 44.4
arahy.Tifrunner.gnm1.ann1.JD0INC Arachis hypogaea HOM05D001006 ORTHO05D000868 7.5e-06 54.3 61 49.2
FAN17G0553 Fragaria x ananassa HOM05D001006 ORTHO05D000868 7.5e-06 54.3 61 49.2
MBI16_g05026_MAGBIO Magnolia biondii HOM05D001006 ORTHO05D000868 7.5e-06 54.3 50 54.0
PGR102G0578 Punica granatum HOM05D001006 ORTHO05D000868 7.5e-06 54.3 89 37.1
SEGI_24415 Sequoiadendron giganteum HOM05D001006 ORTHO05D000868 7.5e-06 54.3 61 50.8
AL1G20740 Arabidopsis lyrata HOM05D001006 ORTHO05D000868 9.8e-06 53.9 63 46.0
Migut.F00524 Erythranthe guttata HOM05D001006 ORTHO05D000868 9.8e-06 53.9 69 43.5
Migut.N02809 Erythranthe guttata HOM05D001006 ORTHO05D000868 9.8e-06 53.9 66 47.0
Gohir.D05G216800 Gossypium hirsutum HOM05D001006 ORTHO05D000868 9.8e-06 53.9 64 45.3
Gorai.009G223700 Gossypium raimondii HOM05D001006 ORTHO05D000868 9.8e-06 53.9 64 45.3
HanXRQChr05g0136771 Helianthus annuus HOM05D001006 ORTHO05D000868 9.8e-06 53.9 65 50.8
Lsat_1_v5_gn_1_321 Lactuca sativa HOM05D001006 ORTHO05D000868 9.8e-06 53.9 60 51.7
Lsat_1_v5_gn_8_66440 Lactuca sativa HOM05D001006 ORTHO05D000868 9.8e-06 53.9 61 52.5
MBI14_g39546_MAGBIO Magnolia biondii HOM05D001006 ORTHO05D000868 9.8e-06 53.9 76 42.1
Phvul.007G241900 Phaseolus vulgaris HOM05D001006 ORTHO05D000868 9.8e-06 53.9 63 46.0
Potri.002G113000 Populus trichocarpa HOM05D001006 ORTHO05D000868 9.8e-06 53.9 76 40.8
Rhsim06G0066800 Rhododendron simsii HOM05D001006 ORTHO05D000868 9.8e-06 53.9 67 43.3
TAR628G1343 Trochodendron aralioides HOM05D001006 ORTHO05D000868 9.8e-06 53.9 54 51.9


User provided reference genes

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