Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 7.9e-38 159.8 75 100.0
A07p30920 Brassica napus HOM05D007747 ORTHO05D009997 1.2e-30 136.0 75 85.3
C06p35910 Brassica napus HOM05D007747 ORTHO05D009997 2.1e-30 135.2 75 85.3
C06p35890 Brassica napus HOM05D007747 ORTHO05D009997 2.7e-30 134.8 75 82.7
BraA07t30726Z Brassica rapa HOM05D007747 ORTHO05D009997 2.7e-30 134.8 75 82.7
BcaC08g45800 Brassica carinata HOM05D007747 ORTHO05D009997 1.0e-29 132.9 75 81.3
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 1.8e-29 132.1 75 81.3
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.9e-23 112.1 75 65.3
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.3e-19 99.4 74 60.8
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 4.8e-19 97.4 74 59.5
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 1.4e-18 95.9 74 58.1
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 3.1e-18 94.7 74 56.8
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 4.1e-18 94.4 74 56.8
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 3.5e-17 91.3 76 56.6
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.3e-16 89.4 73 52.1
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.7e-16 89.0 73 52.1
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 2.9e-16 88.2 75 52.0
BolC6t38713H Brassica oleracea HOM05D007747 ORTHO05D009997 1.5e-15 85.9 47 85.1
Carub.0001s1284 Capsella rubella HOM05D007747 ORTHO05D009997 2.5e-15 85.1 76 55.3
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 7.2e-15 83.6 73 50.7
Thhalv10006468m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 6.1e-14 80.5 75 49.3
Sp5g02203 Schrenkiella parvula HOM05D009342 ORTHO05D009997 2.0e-12 75.5 74 48.6
Carub.0005s2783 Capsella rubella HOM05D009342 ORTHO05D009997 4.4e-12 74.3 74 48.6
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 1.7e-11 72.4 74 44.6
A09p53240 Brassica napus HOM05D009342 ORTHO05D009997 2.8e-11 71.6 74 48.6
Carub.0001s1285 Capsella rubella HOM05D007747 ORTHO05D009997 4.8e-11 70.9 75 48.0
Aa31LG10G15250 Aethionema arabicum HOM05D009342 ORTHO05D009997 6.3e-11 70.5 73 45.2
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 6.3e-11 70.5 74 44.6
AT3G61172 Arabidopsis thaliana HOM05D009342 ORTHO05D009997 8.3e-11 70.1 74 43.2
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.1e-10 69.7 74 45.9
BcaC07g40621 Brassica carinata HOM05D009342 ORTHO05D009997 1.8e-10 68.9 74 47.3
AL8G11140 Arabidopsis lyrata HOM05D009342 ORTHO05D012604 2.4e-10 68.6 72 44.4
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 2.4e-10 68.6 74 44.6
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 2.4e-10 68.6 74 44.6
BolC4t24705H Brassica oleracea HOM05D007747 ORTHO05D009997 3.1e-10 68.2 73 43.8
A07p25360 Brassica napus HOM05D007747 ORTHO05D009997 7.0e-10 67.0 74 44.6
C08p36050 Brassica napus HOM05D009342 ORTHO05D009997 7.0e-10 67.0 74 45.9
BolC8t51185H Brassica oleracea HOM05D009342 ORTHO05D009997 7.0e-10 67.0 74 45.9
BraA07t30181Z Brassica rapa HOM05D007747 ORTHO05D009997 7.0e-10 67.0 74 44.6
Thhalv10003401m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 9.1e-10 66.6 73 42.5
AT5G47077 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 1.6e-09 65.9 73 45.2
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 1.6e-09 65.9 76 43.4
A04p01250 Brassica napus HOM05D007747 ORTHO05D009997 2.0e-09 65.5 73 42.5
BraA04t15844Z Brassica rapa HOM05D007747 ORTHO05D009997 2.0e-09 65.5 73 42.5
CARHR286760 Cardamine hirsuta HOM05D009342 ORTHO05D009997 2.0e-09 65.5 73 43.8
Carub.0002s0802 Capsella rubella HOM05D007747 ORTHO05D009997 2.7e-09 65.1 77 45.5
AL2G27660 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 4.5e-09 64.3 76 40.8
THA.LOC109116624 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 4.5e-09 64.3 70 37.1
AL5G43410 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.7e-09 63.5 55 52.7
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 1.0e-08 63.2 80 42.5
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 1.0e-08 63.2 80 42.5
A07p30430 Brassica napus HOM05D007747 ORTHO05D009997 1.7e-08 62.4 78 42.3
THA.LOC104815826 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 2.9e-08 61.6 69 36.2
C04p31610 Brassica napus HOM05D007747 ORTHO05D028248 3.8e-08 61.2 80 41.2
C06p27230 Brassica napus HOM05D007747 ORTHO05D009997 3.8e-08 61.2 64 43.8
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 3.8e-08 61.2 76 42.1
BolC4t24708H Brassica oleracea HOM05D007747 ORTHO05D028248 3.8e-08 61.2 80 41.2
A09p22830 Brassica napus HOM05D009342 ORTHO05D012604 5.0e-08 60.8 58 44.8
C09p29340 Brassica napus HOM05D009342 ORTHO05D012604 5.0e-08 60.8 58 44.8
BraA07t30680Z Brassica rapa HOM05D007747 ORTHO05D009997 5.0e-08 60.8 78 41.0
BraA09t37885Z Brassica rapa HOM05D009342 ORTHO05D012604 5.0e-08 60.8 58 44.8
C04p55800 Brassica napus HOM05D016272 ORTHO05D014853 8.5e-08 60.1 74 39.2
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.1e-07 59.7 76 38.2
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 1.1e-07 59.7 76 40.8
A04p20110 Brassica napus HOM05D016272 ORTHO05D014853 1.1e-07 59.7 74 39.2
BcaB06g29617 Brassica carinata HOM05D016272 ORTHO05D014853 1.9e-07 58.9 75 37.3
A04p20120 Brassica napus HOM05D016272 ORTHO05D014853 1.9e-07 58.9 74 39.2
BolC4t27109H Brassica oleracea HOM05D016272 ORTHO05D014853 1.9e-07 58.9 74 39.2
BcaB02g08951 Brassica carinata HOM05D007747 ORTHO05D009997 3.2e-07 58.2 74 41.9
A05p05960 Brassica napus HOM05D007747 ORTHO05D009997 3.2e-07 58.2 74 43.2
BolC4t22310H Brassica oleracea HOM05D007747 ORTHO05D009997 3.2e-07 58.2 74 41.9
BraA05t19559Z Brassica rapa HOM05D007747 ORTHO05D009997 3.2e-07 58.2 74 43.2
C04p55820 Brassica napus HOM05D016272 ORTHO05D014853 4.2e-07 57.8 74 39.2
Thhalv10017941m.g Eutrema salsugineum HOM05D007747 ORTHO05D014853 4.2e-07 57.8 72 37.5
AT5G47075 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 7.2e-07 57.0 77 41.6
Carub.0002s1314 Capsella rubella HOM05D007747 ORTHO05D009997 1.2e-06 56.2 80 41.2
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 2.1e-06 55.5 80 37.5
A07p18970 Brassica napus HOM05D007747 ORTHO05D024130 2.7e-06 55.1 83 38.6
BolC4t27108H Brassica oleracea HOM05D016272 ORTHO05D014853 2.7e-06 55.1 74 36.5
BraA07t29602Z Brassica rapa HOM05D007747 ORTHO05D024130 2.7e-06 55.1 83 38.6
AL8G18250 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 3.6e-06 54.7 78 38.5
AL8G18260 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 3.6e-06 54.7 78 38.5
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 3.6e-06 54.7 76 38.2
CARHR096870 Cardamine hirsuta HOM05D007747 ORTHO05D009997 4.7e-06 54.3 43 51.2
BolC6t37892H Brassica oleracea HOM05D007747 ORTHO05D009997 6.1e-06 53.9 74 40.5
BolC4t23792H Brassica oleracea HOM05D007747 ORTHO05D024130 8.0e-06 53.5 83 38.6


User provided reference genes

Program Settings