Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 1.2e-44 183.0 107 100.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 1.2e-36 156.4 107 86.9
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.8e-36 155.2 107 86.9
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 3.4e-34 148.3 107 88.8
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 1.1e-32 143.3 107 82.2
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.9e-32 142.5 107 80.4
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 2.4e-32 142.1 107 79.4
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.2e-31 139.8 107 78.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 2.1e-31 139.0 105 85.7
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 3.5e-31 138.3 107 78.5
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 7.8e-31 137.1 105 84.8
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.5e-29 132.9 108 78.7
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.1e-28 129.0 102 82.4
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.1e-28 129.0 102 82.4
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 3.6e-28 128.3 107 77.6
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 8.1e-28 127.1 107 75.7
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 8.1e-28 127.1 107 76.6
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 8.1e-28 127.1 107 75.7
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 1.0e-22 110.2 83 80.7
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 2.5e-21 105.5 107 66.4
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 9.6e-21 103.6 107 63.6
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.1e-16 90.1 107 58.9
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 1.1e-16 90.1 107 58.9
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 3.2e-16 88.6 107 58.9
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.2e-16 88.6 107 57.9
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.2e-16 88.6 107 57.9
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 7.1e-16 87.4 107 58.9
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.2e-15 86.7 107 57.9
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.7e-15 85.5 107 57.9
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 6.0e-15 84.3 107 57.0
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.8e-14 82.8 107 55.1
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.8e-14 82.8 107 57.9
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 5.1e-14 81.3 107 56.1
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 6.7e-14 80.9 107 56.1
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 8.7e-14 80.5 107 55.1
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 1.1e-13 80.1 108 55.6
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.9e-13 79.3 107 55.1
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.9e-13 79.3 107 55.1
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 2.5e-13 79.0 108 53.7
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 3.3e-13 78.6 107 52.3
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 3.3e-13 78.6 109 56.9
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 4.3e-13 78.2 107 54.2
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 4.3e-13 78.2 117 52.1
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 7.4e-13 77.4 110 54.5
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 9.6e-13 77.0 107 50.5
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 2.8e-12 75.5 110 50.9
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 3.7e-12 75.1 108 50.0
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 3.7e-12 75.1 107 53.3
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 4.8e-12 74.7 107 50.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.8e-11 72.8 96 57.3
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.8e-11 72.8 103 50.5
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 1.8e-11 72.8 100 55.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 4.0e-11 71.6 107 52.3
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 4.0e-11 71.6 101 53.5
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 5.3e-11 71.2 64 68.8
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 6.9e-11 70.9 117 53.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.6e-10 68.9 106 45.3
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 3.4e-10 68.6 107 47.7
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 5.8e-10 67.8 112 48.2
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 1.0e-09 67.0 104 47.1
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 1.7e-09 66.2 55 72.7
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.2e-09 65.9 108 48.1
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.2e-09 65.9 101 46.5
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 2.9e-09 65.5 110 45.5
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 6.5e-09 64.3 108 47.2
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.1e-08 63.5 95 54.7
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.1e-08 63.5 108 48.1
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 1.1e-08 63.5 102 49.0
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.4e-08 63.2 96 55.2
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.9e-08 62.8 114 54.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 1.9e-08 62.8 113 48.7
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 4.2e-08 61.6 106 47.2
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 7.1e-08 60.8 107 45.8
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 7.1e-08 60.8 109 49.5
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 9.3e-08 60.5 107 44.9
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-07 60.1 90 54.4
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.6e-07 59.7 103 49.5
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 2.7e-07 58.9 107 45.8
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 3.5e-07 58.5 111 43.2
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 6.0e-07 57.8 48 70.8
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 7.9e-07 57.4 49 69.4
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.3e-06 56.6 107 43.0
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.8e-06 56.2 108 45.4
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 1.8e-06 56.2 44 68.2
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.8e-06 56.2 62 61.3
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 2.3e-06 55.8 105 46.7
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 3.0e-06 55.5 51 64.7
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 3.9e-06 55.1 110 47.3
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 3.9e-06 55.1 107 45.8
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 8.7e-06 53.9 49 67.3


User provided reference genes

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