Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-176 623.2 308 100.0
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.7e-156 555.4 307 88.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-154 549.7 307 87.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.0e-152 541.6 312 86.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 9.2e-149 530.4 309 83.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.8e-148 527.3 308 84.7
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.8e-99 366.7 200 88.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.2e-95 354.0 315 59.7
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-94 350.5 305 59.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.8e-94 349.0 299 59.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.1e-93 344.7 342 56.1
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-90 336.7 295 60.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.6e-90 335.1 300 56.3
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-89 333.6 307 58.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.2e-89 331.3 297 59.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.0e-88 328.9 307 57.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-87 326.2 299 58.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 4.5e-87 325.5 292 58.9
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.6e-87 324.7 298 59.4
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-86 323.9 309 56.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.2e-86 323.2 221 71.5
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.8e-86 322.4 283 59.7
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 4.9e-86 322.0 295 57.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 9.3e-85 317.8 300 55.3
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.7e-84 316.2 307 53.7
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 4.6e-84 315.5 292 62.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-83 313.2 313 52.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.3e-83 313.2 313 52.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 3.0e-83 312.8 307 53.4
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.0e-83 312.8 313 52.4
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.9e-83 312.4 261 59.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 5.1e-83 312.0 313 52.4
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 5.1e-83 312.0 307 53.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 5.7e-82 308.5 292 61.3
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.3e-81 305.1 214 68.7
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 3.1e-80 302.8 309 52.4
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 3.1e-80 302.8 304 54.3
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-80 301.6 214 66.8
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 9.0e-80 301.2 267 58.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.2e-79 300.8 261 57.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.4e-79 299.3 291 56.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 4.5e-79 298.9 259 59.1
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 5.9e-79 298.5 277 57.0
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-78 297.7 284 53.5
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-78 297.4 308 55.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-78 297.4 279 56.6
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-78 297.4 293 55.3
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.3e-78 297.4 259 59.5
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-78 297.0 214 66.8
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.2e-78 296.6 299 52.5
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-78 296.2 279 54.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.9e-78 296.2 214 66.4
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 5.0e-78 295.4 259 57.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 8.5e-78 294.7 214 65.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.1e-77 294.3 298 54.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.4e-77 293.9 271 56.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.9e-77 293.5 290 54.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-77 293.1 214 65.4
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.2e-77 292.7 258 59.3
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.2e-77 292.4 259 56.4
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.5e-77 292.0 214 66.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.2e-76 290.8 308 52.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.2e-76 290.8 269 56.1
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-76 290.0 212 64.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.7e-76 289.7 218 63.3
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.9e-76 288.1 219 63.5
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 7.9e-76 288.1 264 55.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 7.9e-76 288.1 314 50.3
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.0e-75 287.7 308 50.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-75 287.0 273 54.6
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.3e-75 286.6 317 51.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.3e-75 286.6 263 58.6
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.0e-75 286.2 259 57.1
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.7e-75 285.0 220 63.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 6.7e-75 285.0 269 53.9
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.1e-74 284.3 257 56.4
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.0e-74 283.5 309 51.1
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 5.7e-74 282.0 269 55.4
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 5.7e-74 282.0 297 50.5
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 9.7e-74 281.2 274 52.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 9.7e-74 281.2 286 52.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 9.7e-74 281.2 261 54.8
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.3e-73 280.8 257 55.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 4.8e-73 278.9 318 47.8
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 4.8e-73 278.9 310 49.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.8e-73 278.9 269 52.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 4.8e-73 278.9 290 51.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 6.3e-73 278.5 280 54.6
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 6.3e-73 278.5 260 55.0
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.3e-73 278.5 216 62.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 8.2e-73 278.1 263 55.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 8.2e-73 278.1 283 50.9
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.4e-72 277.3 294 52.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.8e-72 276.9 263 54.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.1e-72 275.8 300 49.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 6.9e-72 275.0 272 52.6
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.5e-71 272.3 272 52.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 4.5e-71 272.3 267 53.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.9e-71 271.9 260 53.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 7.7e-71 271.6 233 57.5
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 7.7e-71 271.6 273 52.7
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.0e-70 271.2 264 52.7
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.7e-70 270.4 216 61.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.9e-70 269.6 270 53.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 6.5e-70 268.5 262 53.4
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.1e-69 267.7 246 53.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-69 266.5 227 59.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.2e-69 266.2 333 44.7
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.2e-69 266.2 289 49.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.2e-69 265.8 333 44.4
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.2e-69 265.8 240 55.8
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.2e-69 265.8 291 51.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 7.2e-69 265.0 244 54.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 7.2e-69 265.0 260 52.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.2e-68 264.2 260 52.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.6e-68 263.8 270 50.4
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.6e-68 263.8 221 57.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.7e-68 263.1 213 60.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.7e-68 262.3 261 52.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.0e-67 261.2 279 49.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.3e-67 260.0 265 53.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.9e-67 259.2 220 57.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.7e-65 253.8 345 42.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.7e-65 252.7 329 44.1
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.8e-64 250.4 344 45.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.1e-64 249.2 286 45.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 9.1e-64 248.1 317 45.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.5e-63 246.1 216 54.6
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.5e-63 245.7 131 90.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.5e-63 245.7 324 43.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.7e-63 245.0 217 54.8
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.0e-62 242.3 291 49.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.2e-61 238.4 238 54.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.4e-59 234.2 341 40.8
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 8.8e-59 231.5 216 54.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.8e-59 231.5 272 48.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.7e-57 226.1 238 51.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 8.2e-57 224.9 201 57.7
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 3.1e-56 223.0 212 55.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.1e-56 222.6 233 53.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 9.1e-56 221.5 258 46.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.6e-52 209.5 176 58.5
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.8e-49 199.9 144 68.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.1e-45 188.0 203 45.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.6e-44 184.1 186 57.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 3.6e-44 183.0 271 42.1
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-43 178.7 165 54.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.4e-42 176.4 137 59.1
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.2e-39 167.9 187 50.3
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 8.6e-38 161.8 121 65.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-37 161.0 127 61.4
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.3e-35 153.7 154 51.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.0e-34 150.6 120 62.5
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.3e-33 147.9 287 35.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.5e-31 139.8 206 41.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.7e-30 137.5 136 54.4
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-30 137.1 136 47.1
CARHR062470 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.6e-29 132.5 102 71.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.1e-27 126.7 173 39.9
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.4e-24 117.9 184 36.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 8.6e-22 108.6 185 34.6
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.5e-21 107.1 85 63.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.9e-19 98.6 78 62.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 5.4e-16 89.4 102 43.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.2e-15 88.2 84 47.6
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-13 80.9 207 28.5
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.3e-13 80.1 88 47.7
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.3e-13 80.1 85 50.6
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.8e-12 77.0 175 34.3
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.1e-11 73.6 160 34.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 4.0e-11 73.2 167 30.5
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 8.9e-11 72.0 77 49.4
A07p35860 Brassica napus HOM05D001860 ORTHO05D004922 2.7e-07 60.5 69 52.2
Hma1.2p1_1598F.1_g293010 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 1.0e-06 58.5 176 26.7
Hma1.2p1_1598F.1_g292986 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 1.3e-06 58.2 176 26.7
VMungo1127G0051 Vigna mungo HOM05D001535 ORTHO05D004010 3.0e-06 57.0 171 29.8
Hma1.2p1_1598F.1_g293020 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 3.9e-06 56.6 176 26.1
PRCOL_00001560 Prasinoderma coloniale HOM05D019522 ORTHO05D024948 3.9e-06 56.6 112 38.4
Hma1.2p1_1598F.1_g293000 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 6.6e-06 55.8 115 31.3
BcaB07g32037 Brassica carinata HOM05D001535 ORTHO05D003710 8.6e-06 55.5 177 25.4
Thhalv10008036m.g Eutrema salsugineum HOM05D001535 ORTHO05D003710 8.6e-06 55.5 110 31.8
Hma1.2p1_1598F.1_g292983 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 8.6e-06 55.5 109 31.2
Hma1.2p1_1598F.1_g293009 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 8.6e-06 55.5 109 31.2


User provided reference genes

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