Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.2e-43 179.5 90 100.0
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 3.4e-27 124.8 87 77.0
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.7e-26 122.5 85 77.6
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 2.2e-26 122.1 66 95.5
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 2.9e-26 121.7 78 85.9
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.9e-25 119.0 86 74.4
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.4e-25 118.6 65 93.8
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 7.1e-25 117.1 66 92.4
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 7.1e-25 117.1 66 92.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 2.1e-24 115.5 66 90.9
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 7.8e-24 113.6 66 89.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 1.0e-23 113.2 66 89.4
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 3.0e-23 111.7 66 89.4
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 3.6e-21 104.8 76 72.4
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.8e-20 102.4 69 76.8
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 3.4e-19 98.2 66 74.2
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 7.6e-19 97.1 67 71.6
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 7.6e-19 97.1 67 76.1
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 2.2e-18 95.5 67 74.6
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.2e-18 95.5 67 73.1
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 2.2e-18 95.5 71 70.4
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 3.8e-18 94.7 67 74.6
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-18 94.4 67 76.1
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-18 94.4 67 76.1
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-18 94.4 67 76.1
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 4.9e-18 94.4 61 77.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 1.1e-17 93.2 67 71.6
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.1e-17 93.2 67 70.1
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.4e-17 92.8 66 68.2
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.9e-17 92.4 63 76.2
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.9e-17 92.4 63 76.2
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 3.2e-17 91.7 63 74.6
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 5.4e-17 90.9 67 70.1
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 5.4e-17 90.9 66 69.7
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 5.4e-17 90.9 54 81.5
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 9.2e-17 90.1 52 84.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.2e-16 89.7 67 70.1
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.2e-16 89.7 67 70.1
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.2e-16 89.7 69 66.7
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.6e-16 89.4 53 81.1
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.1e-16 89.0 62 72.6
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.7e-16 88.6 54 79.6
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 3.5e-16 88.2 69 69.6
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.5e-16 88.2 67 68.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 3.5e-16 88.2 78 61.5
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.3e-15 86.3 66 69.7
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.7e-15 85.9 54 74.1
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.7e-15 85.9 67 65.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 1.7e-15 85.9 65 66.2
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 2.3e-15 85.5 72 68.1
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 3.0e-15 85.1 66 66.7
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 5.1e-15 84.3 67 67.2
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 5.1e-15 84.3 65 64.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 6.6e-15 84.0 67 67.2
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 8.7e-15 83.6 67 67.2
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.7e-15 83.6 67 67.2
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.7e-15 83.6 67 67.2
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 8.7e-15 83.6 67 67.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 8.7e-15 83.6 52 76.9
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 8.7e-15 83.6 67 67.2
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 8.7e-15 83.6 69 65.2
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 8.7e-15 83.6 69 65.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.1e-14 83.2 66 68.2
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.1e-14 83.2 66 68.2
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.1e-14 83.2 66 68.2
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.1e-14 83.2 69 62.3
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 1.5e-14 82.8 66 68.2
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.5e-14 82.8 68 67.6
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 1.9e-14 82.4 85 55.3
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.9e-14 82.4 61 68.9
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 1.9e-14 82.4 66 66.7
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 2.5e-14 82.0 66 69.7
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.3e-14 81.6 65 63.1
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 4.3e-14 81.3 67 65.7
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 5.6e-14 80.9 67 65.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 7.3e-14 80.5 66 65.2
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 7.3e-14 80.5 67 62.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 9.6e-14 80.1 66 60.6
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 9.6e-14 80.1 67 61.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 9.6e-14 80.1 66 63.6
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 9.6e-14 80.1 66 63.6
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 9.6e-14 80.1 66 65.2
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 9.6e-14 80.1 66 65.2
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 9.6e-14 80.1 67 64.2
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.2e-13 79.7 65 66.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.2e-13 79.7 74 58.1
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.6e-13 79.3 51 74.5
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.6e-13 79.3 65 61.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 2.1e-13 79.0 66 63.6
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 2.8e-13 78.6 48 79.2
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.7e-13 77.8 54 70.4
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 4.7e-13 77.8 67 65.7
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.9e-12 73.9 52 67.3
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.6e-11 72.0 52 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 4.4e-11 71.2 59 62.7
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 5.8e-11 70.9 65 55.4
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.3e-10 69.7 85 50.6
BcaB03g15444 Brassica carinata HOM05D007420 ORTHO05D009353 1.7e-10 69.3 34 100.0
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 2.9e-10 68.6 47 70.2
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.1e-09 66.6 42 78.6
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 6.6e-07 57.4 63 46.0
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 8.7e-07 57.0 53 50.9
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 5.6e-06 54.3 33 78.8


User provided reference genes

Program Settings