Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 1.0e-70 270.0 142 100.0
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 4.6e-63 244.6 142 92.3
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 4.6e-63 244.6 142 92.3
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 1.3e-60 236.5 144 88.9
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 1.3e-60 236.5 144 88.9
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 1.3e-60 236.5 144 88.9
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 6.5e-57 224.2 148 83.8
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 4.2e-56 221.5 148 82.4
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 4.2e-56 221.5 148 82.4
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-55 219.2 148 81.8
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 3.9e-54 214.9 148 82.4
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 5.7e-53 211.1 149 80.5
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 8.5e-49 197.2 150 78.7
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 1.2e-47 193.4 145 76.6
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 1.8e-46 189.5 148 75.0
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 1.3e-44 183.3 147 74.8
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 1.3e-44 183.3 147 74.8
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 6.3e-44 181.0 147 74.1
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 1.1e-43 180.3 147 74.1
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 1.1e-43 180.3 147 74.1
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 1.4e-38 163.3 157 66.9
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 3.0e-38 162.2 151 66.9
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 2.8e-36 155.6 155 63.9
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 1.3e-33 146.7 153 63.4
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 2.5e-32 142.5 151 61.6
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 3.3e-29 132.1 164 54.3
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 1.1e-19 100.5 154 45.5
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 2.0e-18 96.3 156 44.9
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.7e-18 95.9 170 44.1
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 3.5e-18 95.5 163 46.0
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 5.9e-18 94.7 165 44.2
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.7e-17 93.2 149 49.7
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 2.3e-17 92.8 161 46.0
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 3.8e-17 92.0 147 46.3
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.1e-16 90.5 163 43.6
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.1e-16 90.5 163 43.6
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 1.9e-16 89.7 166 42.2
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 1.9e-16 89.7 164 43.3
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 2.5e-16 89.4 149 48.3
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.3e-16 89.0 154 39.6
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.2e-15 87.0 148 47.3
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 2.1e-15 86.3 146 44.5
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.8e-15 85.9 160 41.9
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 3.6e-15 85.5 149 42.3
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 4.7e-15 85.1 163 42.3
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.4e-14 83.6 156 43.6
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 1.8e-14 83.2 148 43.2
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 5.2e-14 81.6 144 42.4
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 6.8e-14 81.3 162 44.4
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 8.9e-14 80.9 165 42.4
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 8.9e-14 80.9 169 37.9
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 8.9e-14 80.9 151 42.4
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 8.9e-14 80.9 155 42.6
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 2.6e-13 79.3 146 44.5
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 4.4e-13 78.6 164 38.4
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 7.5e-13 77.8 148 39.9
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.8e-13 77.4 143 44.1
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 1.7e-12 76.6 151 37.7
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-12 76.6 146 43.8
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 1.7e-12 76.6 169 40.2
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 1.7e-12 76.6 147 43.5
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.7e-12 76.6 147 40.1
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.7e-12 76.6 147 40.1
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 2.2e-12 76.3 148 40.5
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 3.7e-12 75.5 159 39.6
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 3.7e-12 75.5 147 43.5
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 4.9e-12 75.1 172 40.1
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 4.9e-12 75.1 158 41.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 1.1e-11 73.9 175 38.3
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 1.1e-11 73.9 169 39.6
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 1.1e-11 73.9 151 39.7
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.1e-11 73.9 155 40.6
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 1.1e-11 73.9 145 42.1
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 1.4e-11 73.6 155 40.6
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 1.4e-11 73.6 157 40.1
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 1.8e-11 73.2 157 38.9
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 2.4e-11 72.8 156 35.9
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 2.4e-11 72.8 145 41.4
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.4e-11 71.6 139 42.4
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 5.4e-11 71.6 158 36.7
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 9.2e-11 70.9 163 38.7
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 2.0e-10 69.7 161 39.1
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 2.7e-10 69.3 157 39.5
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 3.5e-10 68.9 154 39.6
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 3.5e-10 68.9 167 38.9
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 3.5e-10 68.9 150 42.7
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 4.5e-10 68.6 147 38.8
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 5.9e-10 68.2 157 36.3
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 5.9e-10 68.2 164 37.2
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 5.9e-10 68.2 149 38.9
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.0e-09 67.4 163 38.0
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 1.0e-09 67.4 158 37.3
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.0e-09 67.4 162 38.3
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.3e-09 67.0 161 40.4
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 1.3e-09 67.0 159 39.6
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 1.7e-09 66.6 170 35.9
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 1.7e-09 66.6 160 39.4
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 1.7e-09 66.6 146 41.1
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 1.7e-09 66.6 157 38.9
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.7e-09 66.6 170 34.7
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 2.3e-09 66.2 155 40.0
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.3e-09 66.2 151 37.7
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 151 38.4
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.9e-09 65.9 148 37.2
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 2.9e-09 65.9 153 36.6
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 2.9e-09 65.9 161 37.3
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 2.9e-09 65.9 162 37.0
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 2.9e-09 65.9 143 37.1
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 3.8e-09 65.5 166 36.7
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.0e-09 65.1 166 38.0
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 5.0e-09 65.1 161 34.2
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 5.0e-09 65.1 170 34.1
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 6.6e-09 64.7 163 34.4
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 6.6e-09 64.7 166 37.3
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 6.6e-09 64.7 152 40.1
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 1.1e-08 63.9 172 37.2
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.1e-08 63.9 170 37.6
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 1.5e-08 63.5 146 33.6
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.5e-08 63.5 156 35.3
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.5e-08 63.5 156 35.3
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.9e-08 63.2 145 37.9
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 1.9e-08 63.2 164 34.8
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 1.9e-08 63.2 160 35.0
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 2.5e-08 62.8 160 38.1
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 3.3e-08 62.4 172 36.0
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 3.3e-08 62.4 166 36.7
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.3e-08 62.4 164 36.6
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 3.3e-08 62.4 161 37.3
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.3e-08 62.4 101 44.6
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 4.3e-08 62.0 160 33.8
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 4.3e-08 62.0 150 40.0
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 5.6e-08 61.6 172 36.0
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.6e-08 61.6 98 48.0
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 5.6e-08 61.6 166 33.1
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 5.6e-08 61.6 166 33.1
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 5.6e-08 61.6 112 42.0
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 7.3e-08 61.2 155 34.8
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 7.3e-08 61.2 164 36.0
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 9.5e-08 60.8 166 36.1
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 9.5e-08 60.8 171 35.7
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 9.5e-08 60.8 166 33.1
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 9.5e-08 60.8 174 35.1
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 1.2e-07 60.5 164 36.0
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.2e-07 60.5 185 34.6
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 1.2e-07 60.5 162 39.5
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-07 60.5 164 36.0
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 1.2e-07 60.5 160 35.6
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.2e-07 60.5 158 35.4
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.2e-07 60.5 158 36.1
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-07 60.1 164 35.4
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.6e-07 60.1 155 36.1
Duzib248G0302 Durio zibethinus HOM05D003134 ORTHO05D003500 2.8e-07 59.3 82 48.8
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.8e-07 59.3 163 36.8
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 2.8e-07 59.3 161 36.0
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 2.8e-07 59.3 158 35.4
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 4.7e-07 58.5 165 33.3
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 4.7e-07 58.5 169 34.9
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 4.7e-07 58.5 108 40.7
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 6.1e-07 58.2 170 33.5
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.1e-07 58.2 164 35.4
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 6.1e-07 58.2 171 33.3
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 6.1e-07 58.2 162 35.2
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-06 57.0 164 33.5
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.8e-06 56.6 168 35.1
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 2.3e-06 56.2 164 34.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 2.3e-06 56.2 102 43.1
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 3.0e-06 55.8 166 34.9
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 3.0e-06 55.8 166 34.9
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 3.0e-06 55.8 174 33.3
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 4.0e-06 55.5 168 31.5
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.0e-06 55.5 164 35.4
Duzib133G1507 Durio zibethinus HOM05D003134 ORTHO05D003500 5.2e-06 55.1 173 31.2
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 5.2e-06 55.1 166 33.1
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 6.8e-06 54.7 158 34.8


User provided reference genes

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