Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15402 Brassica carinata HOM05D000179 ORTHO05D000107 3.8e-109 398.3 215 100.0
BcaB03g15401 Brassica carinata HOM05D000179 ORTHO05D000107 5.7e-105 384.4 216 97.7
A07p32150 Brassica napus HOM05D000179 ORTHO05D000107 1.1e-92 343.6 220 87.7
BraA07t30845Z Brassica rapa HOM05D000179 ORTHO05D000107 1.1e-92 343.6 220 87.7
BcaC08g46239 Brassica carinata HOM05D000179 ORTHO05D000107 7.2e-92 340.9 220 85.9
C06p41910 Brassica napus HOM05D000179 ORTHO05D000107 7.2e-92 340.9 220 85.9
BolC6t39241H Brassica oleracea HOM05D000179 ORTHO05D000107 7.2e-92 340.9 220 85.9
A07p34600 Brassica napus HOM05D000179 ORTHO05D000107 3.0e-90 335.5 220 85.5
BcaC08g45995 Brassica carinata HOM05D000179 ORTHO05D000107 1.5e-89 333.2 220 85.5
C06p37920 Brassica napus HOM05D000179 ORTHO05D000107 1.5e-89 333.2 220 85.5
BolC6t38891H Brassica oleracea HOM05D000179 ORTHO05D000107 1.5e-89 333.2 220 85.5
BcaB03g15122 Brassica carinata HOM05D000179 ORTHO05D000107 7.7e-86 320.9 224 82.6
Sp5g23130 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.5e-84 316.6 224 82.6
Thhalv10018614m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 1.4e-79 300.1 225 77.8
BraA07t31078Z Brassica rapa HOM05D000179 ORTHO05D000107 8.0e-75 284.3 220 75.5
CARHR060800 Cardamine hirsuta HOM05D000179 ORTHO05D000107 2.2e-72 276.2 234 73.5
AL2G26780 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 2.7e-70 269.2 232 72.8
BcaC08g46240 Brassica carinata HOM05D000179 ORTHO05D000107 1.7e-69 266.5 180 81.7
AT1G68130 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 4.2e-68 261.9 232 72.0
Carub.0002s1461 Capsella rubella HOM05D000179 ORTHO05D000107 5.5e-68 261.5 233 71.7
THA.LOC104807938 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 5.6e-20 102.1 216 40.3
THA.LOC104809789 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 2.1e-19 100.1 213 41.3
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 1.4e-18 97.4 167 42.5
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 1.7e-16 90.5 97 53.6
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.2e-16 90.1 182 37.4
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 2.2e-16 90.1 254 35.4
Carub.0001s2532 Capsella rubella HOM05D000179 ORTHO05D000107 1.4e-15 87.4 226 39.4
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 3.2e-15 86.3 220 35.5
BcaC05g26692 Brassica carinata HOM05D000179 ORTHO05D000107 7.1e-15 85.1 186 40.3
Sp1g23040 Schrenkiella parvula HOM05D000179 ORTHO05D000107 7.1e-15 85.1 226 37.6
BcaB03g12040 Brassica carinata HOM05D000179 ORTHO05D000107 1.2e-14 84.3 220 38.6
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.7e-14 83.2 223 35.9
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 7.9e-14 81.6 150 36.7
VMungo0251G2660 Vigna mungo HOM05D000179 ORTHO05D000107 1.1e-12 77.8 258 31.0
TAR374G0878 Trochodendron aralioides HOM05D000179 ORTHO05D028851 1.9e-12 77.0 102 43.1
Lsat_1_v5_gn_4_22261 Lactuca sativa HOM05D000179 ORTHO05D000107 3.3e-12 76.3 213 33.3
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 5.6e-12 75.5 97 41.2
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 5.6e-12 75.5 151 38.4
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 9.6e-12 74.7 250 32.0
Thhalv10009376m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 1.3e-11 74.3 221 35.7
A08p26800 Brassica napus HOM05D000179 ORTHO05D000107 2.1e-11 73.6 219 33.8
BraA08t34626Z Brassica rapa HOM05D000179 ORTHO05D000107 2.1e-11 73.6 219 33.8
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 2.1e-11 73.6 97 42.3
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 2.8e-11 73.2 106 44.3
BcaC01g01673 Brassica carinata HOM05D000179 ORTHO05D000107 4.8e-11 72.4 219 34.2
C03p73150 Brassica napus HOM05D000179 ORTHO05D000107 4.8e-11 72.4 219 34.2
BolC3t19611H Brassica oleracea HOM05D000179 ORTHO05D000107 4.8e-11 72.4 219 34.2
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 4.8e-11 72.4 125 41.6
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 6.2e-11 72.0 61 60.7
Hma1.2p1_0095F.1_g047490 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 8.1e-11 71.6 240 31.2
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 1.4e-10 70.9 94 44.7
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.1e-10 69.7 204 30.9
Dinv20496 Davidia involucrata HOM05D000179 ORTHO05D000107 6.9e-10 68.6 243 32.5
Dinv20546 Davidia involucrata HOM05D000179 ORTHO05D000107 6.9e-10 68.6 243 32.5
Atru.chr11.991 Acer truncatum HOM05D000179 ORTHO05D000107 9.0e-10 68.2 243 32.9
BcaC05g26487 Brassica carinata HOM05D000179 ORTHO05D000107 9.0e-10 68.2 221 33.9
C05p25350 Brassica napus HOM05D000179 ORTHO05D000107 9.0e-10 68.2 221 33.9
Gohir.D01G135100 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.0e-10 68.2 240 32.5
Gorai.002G171100 Gossypium raimondii HOM05D000179 ORTHO05D000107 9.0e-10 68.2 240 32.5
Ciclev10015315m.g Citrus clementina HOM05D000179 ORTHO05D000107 2.0e-09 67.0 259 31.7
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 2.0e-09 67.0 164 34.1
Glyma.08G092300 Glycine max HOM05D000179 ORTHO05D000107 2.6e-09 66.6 271 28.8
Gohir.A05G308250 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.6e-09 66.6 216 31.0
Gohir.D05G308900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.6e-09 66.6 227 30.8
Manes.15G139200 Manihot esculenta HOM05D000179 ORTHO05D000107 3.4e-09 66.2 252 30.6
CSS0005172 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.8e-09 65.5 248 31.0
CSS0010097 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.8e-09 65.5 248 31.0
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 5.8e-09 65.5 234 29.9
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 5.8e-09 65.5 60 53.3
CARHR026310 Cardamine hirsuta HOM05D000179 ORTHO05D000107 7.6e-09 65.1 226 33.6
Aqoxy3G04054 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 9.9e-09 64.7 71 46.5
PSO063G1128 Papaver somniferum HOM05D000179 ORTHO05D000107 9.9e-09 64.7 67 49.3
PSO782G2107 Papaver somniferum HOM05D000179 ORTHO05D000107 9.9e-09 64.7 67 49.3
Gohir.A01G145200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.3e-08 64.3 239 32.2
Potri.010G101200 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.7e-08 63.9 251 31.5
RcHm_v2.0_Chr4g0445361 Rosa chinensis HOM05D000179 ORTHO05D000107 1.7e-08 63.9 212 31.6
Gorai.009G329200 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.2e-08 63.5 227 30.0
BraA09t39408Z Brassica rapa HOM05D000179 ORTHO05D000107 2.9e-08 63.2 221 33.5
Duzib248G1237 Durio zibethinus HOM05D000179 ORTHO05D000107 2.9e-08 63.2 252 31.3
Actinidia13744 Actinidia chinensis HOM05D000179 ORTHO05D000107 3.8e-08 62.8 167 32.9
COL.COLO4_27569 Corchorus olitorius HOM05D000179 ORTHO05D000107 3.8e-08 62.8 251 30.3
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 4.9e-08 62.4 61 52.5
Duzib268G1689 Durio zibethinus HOM05D000179 ORTHO05D000107 6.4e-08 62.0 252 30.2
Nn3g18479 Nelumbo nucifera HOM05D000179 ORTHO05D000107 6.4e-08 62.0 71 45.1
Peaxi162Scf00171g00727 Petunia axillaris HOM05D000179 ORTHO05D000107 6.4e-08 62.0 99 41.4
Cfa022225 Carpinus fangiana HOM05D000179 ORTHO05D000107 8.4e-08 61.6 252 29.0
SHI26969 Sapria himalayana HOM05D000179 ORTHO05D000107 8.4e-08 61.6 66 48.5
CANSAT78G1491 Cannabis sativa HOM05D000179 ORTHO05D000107 1.4e-07 60.8 178 33.1
Sabra08G0106400 Salix brachista HOM05D000179 ORTHO05D000107 1.4e-07 60.8 257 30.0
AL1G40110 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 1.9e-07 60.5 229 34.1
BolC5t31270H Brassica oleracea HOM05D000179 ORTHO05D000107 1.9e-07 60.5 221 32.1
FAN12G4002 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.9e-07 60.5 97 38.1
Prupe.1G338700 Prunus persica HOM05D000179 ORTHO05D000107 1.9e-07 60.5 126 35.7
A09p39080 Brassica napus HOM05D000179 ORTHO05D000107 2.4e-07 60.1 221 33.0
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 2.4e-07 60.1 57 49.1
Sabra10G0073800 Salix brachista HOM05D000179 ORTHO05D000107 2.4e-07 60.1 250 31.2
Actinidia20102 Actinidia chinensis HOM05D000179 ORTHO05D000107 4.2e-07 59.3 168 32.7
CiPaw.06G058100 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.2e-07 59.3 247 30.0
Nitab4.5_0004454g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.2e-07 59.3 171 31.0
PGR044G0651 Punica granatum HOM05D000179 ORTHO05D000107 4.2e-07 59.3 184 31.0
MELO3C005237.2 Cucumis melo HOM05D000179 ORTHO05D000107 9.3e-07 58.2 113 37.2
Nn4g24574 Nelumbo nucifera HOM05D000179 ORTHO05D000107 9.3e-07 58.2 71 42.3
TWI74G0208 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 9.3e-07 58.2 171 36.3
HPP92_004207 Vanilla planifolia HOM05D000179 ORTHO05D000107 9.3e-07 58.2 98 37.8
Haze_10802 Corylus avellana HOM05D000179 ORTHO05D000107 1.2e-06 57.8 254 28.0
FvH4_4g35830 Fragaria vesca HOM05D000179 ORTHO05D000107 1.2e-06 57.8 142 31.7
MD13G1015000 Malus domestica HOM05D000179 ORTHO05D000107 1.2e-06 57.8 196 32.1
arahy.Tifrunner.gnm1.ann1.MG2JR8 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.6e-06 57.4 133 36.1
arahy.Tifrunner.gnm1.ann1.Y8ZFR1 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.6e-06 57.4 133 36.1
Lj4g0000221 Lotus japonicus HOM05D000179 ORTHO05D000107 1.6e-06 57.4 257 30.7
MBI13_g21684_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 1.6e-06 57.4 180 32.8
TWI53G1503 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.6e-06 57.4 241 28.2
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.1e-06 57.0 111 36.0
CsaV3_5G017150 Cucumis sativus L. HOM05D000179 ORTHO05D000107 2.1e-06 57.0 113 36.3
Glyma.05G137000 Glycine max HOM05D000179 ORTHO05D000107 2.1e-06 57.0 262 28.6
Cpa.g.sc2.118 Carica papaya HOM05D000179 ORTHO05D000107 2.7e-06 56.6 260 28.8
Lj5C164G6 Lonicera japonica HOM05D000179 ORTHO05D000107 2.7e-06 56.6 101 40.6
Phvul.002G184700 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 2.7e-06 56.6 262 27.9
Gohir.A03G113400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.5e-06 56.2 248 29.4
Dinv28228 Davidia involucrata HOM05D000179 ORTHO05D000107 4.6e-06 55.8 97 37.1
Duzib251G0522 Durio zibethinus HOM05D000179 ORTHO05D000107 4.6e-06 55.8 251 29.1
Gohir.A03G091000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.6e-06 55.8 105 38.1
Rhsim09G0084600 Rhododendron simsii HOM05D000179 ORTHO05D000107 4.6e-06 55.8 230 29.6
GSVIVG01011587001 Vitis vinifera HOM05D000179 ORTHO05D000107 4.6e-06 55.8 231 29.0
CDE05G0391 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 6.0e-06 55.5 162 32.1
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 6.0e-06 55.5 145 31.0
FAN22G2121 Fragaria x ananassa HOM05D000179 ORTHO05D000107 6.0e-06 55.5 142 31.0
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 7.9e-06 55.1 97 39.2


User provided reference genes

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