Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.0e-180 636.7 340 100.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.3e-156 556.6 338 89.9
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 2.2e-156 555.8 338 89.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.8e-153 546.2 340 88.8
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.0e-152 542.7 338 88.8
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 7.5e-136 487.6 290 93.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.3e-135 486.9 325 83.7
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.3e-127 460.3 317 84.2
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 6.4e-127 458.0 291 90.4
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 5.4e-126 454.9 245 89.8
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 9.2e-126 454.1 245 89.8
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 9.2e-126 454.1 290 89.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.1e-121 440.7 290 87.9
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.3e-116 423.7 291 85.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.1e-116 421.8 290 83.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 9.6e-115 417.5 292 84.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.2e-114 417.2 295 84.1
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-106 388.3 304 76.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.8e-103 379.0 290 76.9
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.8e-98 362.8 304 71.1
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 8.1e-98 361.3 334 67.7
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.8e-97 360.1 292 73.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.0e-97 359.0 247 72.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 4.0e-97 359.0 245 74.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.5e-96 357.1 245 73.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-96 357.1 293 74.7
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.5e-96 355.5 290 74.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.9e-96 354.4 247 71.3
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.3e-95 354.0 292 72.6
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 2.9e-95 352.8 299 71.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.9e-95 352.8 243 72.4
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.4e-95 351.7 249 71.1
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.1e-94 350.9 298 70.5
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.9e-94 350.1 298 71.1
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.4e-94 349.7 266 67.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 7.1e-94 348.2 247 71.3
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 9.3e-94 347.8 242 74.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.2e-93 347.4 290 72.1
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.6e-93 347.1 245 70.6
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.6e-93 347.1 305 68.9
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.1e-93 346.7 247 70.4
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 7.9e-93 344.7 237 70.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.0e-92 344.4 244 70.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.8e-92 343.6 247 71.7
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 3.0e-92 342.8 292 72.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.1e-92 342.0 245 69.4
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 6.7e-92 341.7 254 68.5
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.7e-92 341.3 240 71.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 8.7e-92 341.3 295 71.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 3.3e-91 339.3 243 71.6
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 4.3e-91 339.0 235 70.6
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.6e-91 338.6 305 69.5
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 5.6e-91 338.6 245 70.6
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.3e-90 337.4 322 66.1
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.1e-90 336.7 226 73.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.8e-90 336.3 245 69.4
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.8e-90 336.3 245 68.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.7e-90 335.9 245 68.2
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 4.8e-90 335.5 246 68.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 6.2e-90 335.1 244 69.3
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.1e-90 334.7 301 67.4
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 8.1e-90 334.7 229 72.1
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.1e-89 334.3 246 68.7
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-89 334.3 291 70.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.4e-89 334.0 292 70.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.4e-89 334.0 292 70.5
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.4e-89 334.0 229 72.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.3e-89 332.0 301 66.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.3e-89 332.0 245 67.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.9e-89 331.6 247 67.6
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.9e-89 331.6 247 68.4
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 9.0e-89 331.3 294 70.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-88 330.5 245 69.0
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.5e-88 330.5 245 66.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.0e-88 330.1 228 71.5
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.6e-88 329.7 246 69.1
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 3.4e-88 329.3 295 68.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 4.5e-88 328.9 245 66.5
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.5e-88 328.9 245 66.5
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 5.8e-88 328.6 227 71.4
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.6e-88 328.2 303 67.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.9e-87 326.2 305 68.2
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.9e-87 325.5 248 67.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.2e-86 322.8 262 64.5
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 7.1e-86 321.6 243 67.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.2e-85 320.9 247 66.0
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.8e-84 317.0 232 67.7
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.0e-84 316.2 245 67.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 6.7e-84 315.1 247 66.4
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.5e-83 313.9 251 65.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.5e-83 313.9 301 57.1
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.3e-83 312.4 251 65.3
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.3e-82 310.8 279 60.2
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-82 310.1 246 65.4
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.1e-81 307.8 245 65.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.1e-81 306.2 229 65.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 4.1e-81 305.8 292 66.4
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 7.6e-80 301.6 247 63.6
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 5.0e-79 298.9 247 65.2
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-78 297.4 246 63.8
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.2e-78 296.2 248 63.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 7.1e-78 295.0 215 70.2
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 9.3e-78 294.7 246 62.2
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.6e-77 292.4 213 67.6
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 6.7e-76 288.5 229 64.2
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.1e-75 287.7 302 63.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.5e-75 286.6 234 64.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 9.7e-75 284.6 245 61.6
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.4e-73 280.0 234 63.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.1e-73 279.3 298 61.7
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.0e-71 274.6 283 64.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.3e-71 274.2 229 62.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-71 274.2 238 60.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.9e-71 273.1 247 60.7
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 8.5e-71 271.6 229 59.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.2e-69 267.7 244 58.6
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 7.4e-67 258.5 246 56.9
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.4e-64 249.6 251 55.4
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.0e-63 248.1 304 57.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.2e-62 242.7 200 63.5
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.4e-62 241.5 249 65.9
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.0e-59 233.8 188 65.4
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.7e-58 230.7 190 64.2
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.2e-58 230.3 243 55.1
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.2e-58 230.3 251 51.8
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.8e-58 229.9 236 56.4
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.8e-57 227.3 203 59.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 2.4e-57 226.9 221 55.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.0e-55 221.5 206 57.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.2e-55 220.3 172 64.5
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.6e-51 206.8 253 49.4
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.5e-38 162.5 132 62.9
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 4.4e-35 152.9 152 53.9
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.7e-34 151.0 265 52.1
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.0e-31 139.4 239 39.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 6.6e-31 139.0 261 37.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.5e-30 137.1 244 41.4
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.8e-27 125.2 237 39.2
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 8.3e-26 122.1 223 39.5
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 8.3e-26 122.1 259 35.9
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 3.5e-24 116.7 233 36.9
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.6e-24 116.3 225 35.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.9e-24 115.9 54 96.3
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.3e-23 114.0 233 34.3
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 6.6e-23 112.5 226 35.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.6e-23 112.1 240 36.2
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-22 111.7 236 36.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.5e-22 111.3 228 37.3
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.5e-22 110.5 187 42.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.1e-21 107.5 259 33.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.6e-21 106.7 230 35.2
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 8.0e-21 105.5 238 35.7
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.3e-20 104.0 240 35.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.2e-19 101.7 242 33.1
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.0e-19 100.9 230 33.9
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.9e-18 97.1 236 34.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.9e-17 94.4 227 33.9
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 7.0e-17 92.4 56 73.2
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.3e-15 88.2 257 30.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.6e-15 85.5 45 82.2
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 5.6e-14 82.8 169 37.9
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.1e-12 78.6 258 29.5
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.4e-11 73.2 53 62.3
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 9.8e-11 72.0 248 27.4
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.7e-10 71.2 179 34.1
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.9e-10 70.5 178 34.3
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 2.4e-09 67.4 173 33.5
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 4.1e-09 66.6 51 54.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.6e-08 64.7 48 56.2
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.6e-08 64.7 104 41.3
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 3.0e-07 60.5 67 44.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.1e-07 59.7 30 73.3
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 8.6e-07 58.9 34 61.8
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.5e-06 57.4 57 47.4


User provided reference genes

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