Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 5.1e-78 294.3 142 100.0
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 96.5
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 96.5
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.5e-74 282.7 142 95.1
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.5e-74 282.7 142 95.1
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.5e-74 282.7 142 95.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.0e-74 282.3 142 95.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.0e-74 282.3 142 95.1
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 7.6e-74 280.4 142 94.4
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 7.6e-74 280.4 142 94.4
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.8e-73 278.1 142 93.7
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 8.4e-73 276.9 142 94.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 8.4e-73 276.9 142 93.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 4.2e-72 274.6 142 93.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 4.2e-72 274.6 142 93.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 4.2e-72 274.6 142 93.0
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 2.1e-71 272.3 142 92.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 2.1e-71 272.3 142 92.3
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 3.3e-69 265.0 142 86.6
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.6e-69 264.2 142 89.4
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 9.6e-69 263.5 142 87.3
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.6e-68 262.7 142 85.9
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.7e-68 261.5 142 84.5
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 86.6
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 9.0e-67 256.9 142 83.8
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 9.0e-67 256.9 142 83.8
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.0e-66 255.8 142 84.5
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 83.1
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 83.8
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 84.5
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.1e-61 240.0 191 64.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.5e-61 238.8 142 74.6
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.3e-61 238.0 142 76.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 7.4e-61 237.3 142 76.1
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.6e-60 236.1 142 74.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.1e-60 235.7 142 75.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 74.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 6.3e-60 234.2 140 76.4
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 74.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 76.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 74.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 74.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 74.6
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 74.6
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 72.5
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 74.6
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 74.6
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 73.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 75.4
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 75.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 73.9
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.6e-58 228.8 142 73.2
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.4e-58 228.4 141 75.2
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 3.4e-58 228.4 141 72.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 74.6
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 73.9
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.7e-57 226.1 139 74.8
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.8
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 2.9e-57 225.3 141 71.6
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 71.8
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 71.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 69.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 71.8
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 72.5
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 71.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 73.2
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 71.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 73.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 70.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 72.5
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.9e-56 222.6 141 72.3
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 71.1
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 141 71.6
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 71.1
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.5e-56 221.1 138 72.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.2e-56 220.7 138 73.2
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.6e-55 219.5 138 72.5
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.6e-55 219.5 141 70.9
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 69.7
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 69.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.1e-55 217.6 138 73.2
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 70.4
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.8e-54 216.1 141 70.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.0e-54 215.3 135 74.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 70.6
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.9e-54 214.9 138 72.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 8.7e-54 213.8 141 68.8
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.5e-53 213.0 138 71.7
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.9e-53 212.6 138 73.2
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.3e-53 211.8 142 68.3
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.7e-53 211.1 140 66.4
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 69.5
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 67.6
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.3e-52 209.9 140 66.4
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.6e-52 209.5 142 69.0
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.6e-52 209.5 135 71.1
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-52 208.8 140 66.4
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.7e-52 208.4 139 68.3
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 67.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 67.4
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 6.3e-52 207.6 142 68.3
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 8.2e-52 207.2 141 66.0
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 66.7
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.1e-51 206.8 142 71.8
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 69.5
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 3.1e-51 205.3 193 54.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 3.1e-51 205.3 193 54.4
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.1e-51 205.3 170 58.8
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.1
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.2e-50 203.4 137 65.7
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 68.1
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.5e-50 203.0 141 68.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 66.9
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.0e-49 200.3 142 63.4
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.7e-49 199.5 138 67.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.2e-49 199.1 137 67.9
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 5.0e-49 198.0 142 64.8
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.5e-49 197.6 154 61.0
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 8.5e-49 197.2 142 65.5
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.4e-48 196.4 142 64.8
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 3.2e-48 195.3 143 65.0
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 63.4
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 65.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.2e-48 194.9 142 63.4
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 4.2e-48 194.9 142 64.8
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-47 193.4 138 65.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.1e-47 192.6 138 64.5
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 64.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 62.7
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 62.7
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 2.3e-46 189.1 117 74.4
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 3.0e-46 188.7 140 65.0
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 8.8e-46 187.2 135 63.7
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 8.8e-46 187.2 157 58.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 4.4e-45 184.9 138 63.0
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 5.7e-45 184.5 141 63.8
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 7.4e-45 184.1 140 64.3
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.8e-44 182.2 142 61.3
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.9e-42 174.5 175 52.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.0e-38 163.7 108 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 6.7e-38 161.0 140 53.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 2.0e-37 159.5 141 56.0
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 4.4e-37 158.3 125 59.2
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.7e-37 157.1 141 54.6
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.3e-36 156.8 137 54.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.7e-36 156.4 142 52.8
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.7e-36 155.2 137 53.3
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.4e-35 152.5 138 53.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.3e-33 146.7 285 32.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-33 146.0 129 51.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.9e-33 145.6 129 51.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.0e-30 137.1 124 52.4
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.5e-26 121.7 115 57.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.3e-25 120.2 73 69.9
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.3e-25 120.2 127 47.2
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.6e-23 113.2 80 66.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 3.6e-23 112.1 80 66.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-22 110.2 112 57.1
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.3e-20 103.6 67 67.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 48.6
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 48.6
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-20 103.6 109 48.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.7e-20 102.1 121 43.8
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 4.8e-20 101.7 67 68.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 8.3e-20 100.9 115 53.9
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 2.0e-18 96.3 117 46.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.3e-17 93.6 87 52.9
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.8e-17 92.0 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.8e-17 92.0 59 66.1
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.1e-15 84.7 77 54.5
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.8e-14 83.2 68 55.9
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 4.0e-14 82.0 77 50.6
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.7e-12 75.5 68 52.9
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 1.6e-10 70.1 32 96.9
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-09 67.0 42 71.4
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 1.7e-09 66.6 71 52.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.7e-09 66.6 39 64.1
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 3.8e-09 65.5 43 67.4
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-08 63.9 40 72.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.5e-08 63.5 120 34.2
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.8e-07 59.3 34 76.5
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 6.1e-07 58.2 34 73.5
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.0e-06 55.5 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.8e-06 54.7 36 66.7
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 8.9e-06 54.3 62 43.5


User provided reference genes

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