Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 8.7e-206 720.3 427 100.0
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.1e-188 662.5 414 94.0
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 4.0e-187 658.3 415 94.0
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 7.9e-183 644.0 411 91.5
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.3e-182 643.3 416 92.3
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-181 638.6 417 92.1
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.3e-181 638.6 417 92.1
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 3.5e-175 618.6 401 90.0
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 3.5e-175 618.6 401 90.0
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.8e-174 616.3 401 89.8
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.3e-173 612.1 430 87.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 2.8e-172 609.0 392 90.1
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.0e-169 600.5 411 85.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.3e-169 600.1 392 89.8
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 4.2e-168 595.1 417 86.6
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.2e-167 593.6 418 86.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 4.6e-167 591.7 435 84.1
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 3.8e-161 572.0 418 84.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.2e-152 542.3 341 92.4
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 5.9e-146 521.5 415 77.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.7e-124 450.3 446 65.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.1e-123 447.6 383 72.6
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 4.1e-123 445.7 439 66.7
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.6e-122 443.7 450 64.0
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 5.0e-121 438.7 444 66.2
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.9e-120 436.8 365 73.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 5.6e-120 435.3 450 64.9
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.2e-119 434.1 461 63.8
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 6.1e-119 431.8 370 73.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 7.5e-117 424.9 365 72.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.2e-116 423.3 363 73.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.7e-116 422.5 373 70.8
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 6.4e-116 421.8 371 70.1
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 6.4e-116 421.8 355 74.4
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 8.3e-116 421.4 391 70.6
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 7.0e-115 418.3 394 69.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 9.2e-115 417.9 373 71.3
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.0e-114 416.8 355 73.5
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 3.5e-114 416.0 448 63.4
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 3.0e-113 412.9 449 62.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 3.9e-113 412.5 402 67.7
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.9e-112 410.2 382 67.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.2e-111 407.5 384 67.7
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.6e-111 407.1 449 62.4
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.1e-111 406.8 360 71.7
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.8e-111 406.4 367 70.0
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.4e-110 404.1 377 69.8
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 6.8e-110 401.7 333 74.8
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 8.9e-110 401.4 373 68.6
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 8.9e-110 401.4 364 69.8
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.9e-110 401.4 355 70.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.2e-109 401.0 390 66.7
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.4e-109 399.4 360 68.1
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.4e-109 399.4 390 66.7
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.4e-109 399.4 390 66.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 3.4e-109 399.4 355 70.1
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 5.8e-109 398.7 355 69.9
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.7e-108 397.1 375 67.5
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.7e-108 397.1 381 63.5
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.7e-108 397.1 442 60.6
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.2e-108 396.7 361 70.1
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 8.3e-108 394.8 326 75.8
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 8.3e-108 394.8 361 69.3
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.1e-107 394.4 351 69.2
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.1e-107 394.4 356 69.7
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.9e-107 393.7 359 69.6
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.4e-107 393.3 398 65.8
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 4.1e-107 392.5 423 62.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 2.1e-106 390.2 460 59.3
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.7e-106 389.8 446 60.3
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.6e-106 389.0 339 70.8
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 7.8e-106 388.3 354 69.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.3e-105 387.5 306 77.1
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.3e-105 387.5 358 66.2
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.3e-105 386.7 331 71.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.9e-105 386.0 412 58.7
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 3.3e-104 382.9 442 58.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 9.5e-104 381.3 446 59.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.4e-102 377.5 364 66.8
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 9.9e-101 371.3 365 66.0
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 9.9e-101 371.3 384 63.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.9e-100 369.8 324 72.8
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 7.1e-99 365.2 442 57.9
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 9.2e-99 364.8 368 63.6
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.2e-98 364.4 370 65.7
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.6e-98 364.0 326 69.6
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 4.6e-98 362.5 434 57.1
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.9e-96 357.1 372 63.4
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 3.3e-96 356.3 298 66.8
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.3e-96 355.9 248 76.6
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 3.6e-95 352.8 415 59.0
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.1e-94 351.3 337 68.5
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.4e-94 350.9 326 67.8
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.3e-92 344.4 302 71.5
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.9e-92 343.2 316 68.0
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.1e-90 337.0 355 63.9
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 3.9e-89 332.8 294 73.1
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 6.2e-87 325.5 241 71.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.4e-85 319.7 363 62.5
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 3.3e-80 303.1 376 58.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 5.6e-80 302.4 324 63.6
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 5.3e-78 295.8 438 52.5
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.3e-76 291.2 355 58.9
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.5e-66 256.5 183 76.5
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-64 251.5 228 65.8
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.1e-62 245.0 157 80.9
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.6e-55 221.1 324 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.6e-53 213.8 299 49.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 8.5e-52 208.8 293 52.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.0e-49 201.8 269 56.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.3e-48 196.4 237 48.1
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.7e-47 193.4 123 82.9
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.4e-46 190.7 240 47.9
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 6.1e-42 176.0 273 53.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.8e-39 167.2 245 41.6
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.2e-37 161.8 245 51.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.0e-36 158.7 118 70.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 7.2e-35 152.5 204 43.6
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.4e-30 137.5 239 52.3
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.6e-29 134.8 77 90.9
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.7e-18 97.4 60 80.0
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.0e-18 95.9 157 50.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.9e-12 77.4 162 38.3


User provided reference genes

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