Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.6e-228 795.0 400 100.0
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 8.9e-221 770.0 400 96.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.4e-218 761.9 400 95.0
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 3.5e-217 758.1 401 95.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 9.6e-215 750.0 400 94.0
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 3.1e-213 745.0 401 94.0
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.4e-210 736.1 400 92.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 9.3e-210 733.4 398 92.5
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 9.6e-207 723.4 400 90.0
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 6.2e-206 720.7 397 90.4
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 4.0e-205 718.0 400 89.2
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 8.4e-203 710.3 400 89.0
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.1e-189 665.2 400 83.5
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.1e-185 652.5 400 80.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.8e-166 589.0 391 75.2
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 3.1e-165 585.5 391 73.7
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-161 573.5 391 73.4
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.6e-161 572.0 391 73.7
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 7.9e-161 570.9 394 70.3
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-160 570.1 391 72.6
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.1e-159 567.0 391 72.1
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 9.7e-159 563.9 394 70.6
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 3.1e-157 558.9 391 71.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 7.0e-157 557.8 391 71.9
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.6e-156 555.8 393 70.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 3.5e-156 555.4 394 70.1
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 7.7e-156 554.3 394 70.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 71.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.7e-155 553.1 391 70.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 3.8e-155 552.0 396 66.4
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.1e-154 550.4 394 69.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.1e-154 550.4 396 70.2
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.5e-154 549.3 394 69.8
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 4.2e-154 548.5 420 66.7
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.1e-153 546.2 394 68.5
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 3.6e-153 545.4 419 66.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 8.0e-153 544.3 394 69.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 8.0e-153 544.3 381 71.9
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 8.0e-153 544.3 394 67.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.0e-152 542.3 397 69.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 8.8e-152 540.8 394 68.8
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.6e-151 539.3 394 67.8
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.6e-151 539.3 451 62.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 9.7e-151 537.3 398 67.6
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 9.7e-151 537.3 393 67.7
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.8e-150 535.8 391 68.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.7e-150 535.4 394 67.3
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.1e-149 533.9 411 66.4
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.8e-149 533.1 389 67.6
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.4e-149 532.7 394 66.2
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 9.1e-149 530.8 472 59.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.2e-148 530.4 422 63.3
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 2.9e-147 525.8 394 67.3
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 5.0e-147 525.0 393 67.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 5.0e-147 525.0 391 66.2
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 6.5e-147 524.6 397 66.5
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.5e-147 524.6 394 66.0
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.6e-145 520.0 391 66.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 9.8e-143 510.8 391 65.7
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 9.8e-143 510.8 396 63.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.3e-142 510.4 393 63.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 6.3e-142 508.1 394 65.2
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 7.0e-141 504.6 359 70.8
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 7.0e-141 504.6 399 64.2
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 7.7e-140 501.1 392 62.8
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 7.7e-140 501.1 394 62.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.2e-139 499.6 409 60.6
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 3.8e-139 498.8 394 64.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 5.0e-139 498.4 368 67.1
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.1e-138 497.3 394 63.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.9e-138 496.5 394 62.2
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.2e-137 493.8 396 64.1
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 8.0e-137 491.1 390 62.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.5e-135 486.9 428 60.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.4e-135 485.3 426 59.9
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 6.3e-134 481.5 381 63.3
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.4e-133 480.3 393 61.1
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 9.2e-133 477.6 392 60.7
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.0e-128 464.2 333 69.7
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.0e-127 459.9 360 65.0
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.4e-125 453.8 393 58.0
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.2e-125 452.6 506 50.2
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.9e-122 443.4 390 58.7
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.0e-120 435.6 445 54.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 8.9e-120 434.5 384 58.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.4e-117 426.4 435 54.5
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 9.5e-114 414.5 399 54.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.6e-113 413.7 351 57.3
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.3e-106 388.3 391 54.0
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 8.1e-105 384.8 316 61.1
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 2.0e-103 380.2 286 65.4
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 4.9e-102 375.6 275 65.8
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.3e-99 367.5 401 50.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.6e-98 362.1 297 64.0
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 4.7e-97 359.0 394 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.1e-96 357.8 399 46.6
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.5e-90 337.4 249 69.9
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 2.5e-90 336.7 393 45.0
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 2.4e-85 320.1 295 55.9
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 4.6e-84 315.8 233 69.5
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.8e-80 303.9 223 65.9
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.1e-77 294.7 486 36.8
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.3e-74 283.1 241 61.0
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.1e-73 280.4 370 41.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 9.3e-69 265.0 311 44.1
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-66 257.7 203 64.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.1e-58 231.5 148 73.6
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 3.1e-40 170.2 535 26.2
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 1.9e-37 161.0 139 62.6
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 116 69.0
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 116 69.0
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 116 69.0
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.2e-37 159.1 116 69.0
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.4e-37 158.7 116 68.1
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.4e-37 158.7 116 68.1
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-34 151.4 106 67.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.6e-34 150.6 109 67.9
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.7e-34 149.4 106 67.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-33 147.9 106 66.0
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-32 145.2 80 86.2
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 5.9e-31 139.4 104 62.5
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.2e-29 133.7 174 43.1
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.2e-28 131.7 79 77.2
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.6e-28 130.2 81 75.3
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.0e-26 124.4 70 81.4
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 2.7e-23 114.0 109 56.9
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.7e-23 112.5 62 83.9
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.7e-23 112.5 62 83.9
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.2e-22 110.9 62 82.3
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-21 108.2 114 50.0
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-21 107.5 254 33.9
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-20 104.4 62 80.6
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-19 101.7 62 77.4
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-18 97.4 71 62.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.5e-18 95.9 60 75.0
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.7e-17 94.7 106 48.1
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.2e-17 94.4 69 65.2
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 3.5e-15 87.0 134 42.5
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 4.3e-13 80.1 54 70.4
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.1e-12 76.3 97 39.2
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-11 74.7 65 58.5
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.3e-09 68.6 34 91.2
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 4.1e-08 63.5 42 69.0
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 2.7e-07 60.8 32 84.4


User provided reference genes

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