Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 4.8e-126 454.5 232 100.0
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 2.1e-121 439.1 233 97.4
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 2.0e-119 432.6 229 97.4
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 2.0e-116 422.5 232 94.0
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 3.5e-116 421.8 228 95.2
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 1.0e-115 420.2 258 86.8
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 2.9e-115 418.7 228 95.2
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 2.9e-115 418.7 228 95.2
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 8.5e-115 417.2 228 94.7
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 8.5e-115 417.2 228 94.7
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.8e-112 409.5 230 91.7
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 5.2e-112 407.9 230 90.4
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.0e-111 406.0 238 89.1
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 3.3e-111 405.2 230 90.4
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 2.3e-104 382.5 231 87.0
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 1.2e-95 353.6 233 79.8
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 5.4e-93 344.7 233 76.0
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 2.9e-91 339.0 238 76.1
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 6.6e-91 337.8 236 74.6
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 2.5e-90 335.9 234 73.5
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 5.6e-90 334.7 234 75.2
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.2e-89 333.6 231 75.3
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 4.7e-89 331.6 241 75.1
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 4.7e-89 331.6 240 72.9
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.4e-88 330.1 234 72.2
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 1.4e-88 330.1 234 73.5
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 4.0e-88 328.6 228 76.3
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 8.9e-88 327.4 232 72.4
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.5e-87 326.6 224 75.4
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 2.0e-87 326.2 232 72.0
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 2.6e-87 325.9 228 73.7
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.2e-86 322.8 236 71.6
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.7e-86 322.0 230 73.9
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 3.7e-86 322.0 229 72.9
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 3.7e-86 322.0 234 71.8
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 4.9e-86 321.6 231 72.7
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 6.4e-86 321.2 238 70.2
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 8.3e-86 320.9 236 72.5
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.8e-85 319.7 222 74.8
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.8e-85 319.7 222 74.8
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.8e-85 319.7 222 74.8
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 2.4e-85 319.3 237 70.0
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 3.2e-85 318.9 236 73.3
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 5.4e-85 318.2 229 72.9
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 5.4e-85 318.2 233 73.4
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 7.0e-85 317.8 229 71.6
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 9.2e-85 317.4 237 70.5
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 9.2e-85 317.4 227 72.7
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.6e-84 316.6 222 74.3
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 2.0e-84 316.2 227 72.7
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 3.5e-84 315.5 235 71.1
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 4.6e-84 315.1 231 73.2
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 1.0e-83 313.9 221 70.1
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.7e-83 313.2 231 72.3
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 5.0e-83 311.6 247 67.2
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.1e-82 310.5 231 70.1
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 7.3e-82 307.8 237 70.0
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 2.8e-81 305.8 229 69.0
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 3.6e-81 305.4 186 81.2
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 1.1e-80 303.9 234 66.7
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 1.8e-80 303.1 232 70.7
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 1.8e-80 303.1 235 68.1
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 3.1e-80 302.4 234 66.2
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 4.0e-80 302.0 235 68.9
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.2e-79 300.4 233 68.2
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 3.4e-79 298.9 233 67.4
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 2.9e-78 295.8 234 66.7
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.4e-77 293.5 236 68.6
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.4e-77 293.5 232 68.1
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 3.2e-77 292.4 241 66.4
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 1.2e-76 290.4 200 75.5
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 7.8e-76 287.7 241 65.6
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 1.7e-75 286.6 207 69.6
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 5.0e-75 285.0 236 66.9
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 2.8e-73 279.3 229 65.9
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 6.2e-73 278.1 194 71.6
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.8e-72 276.6 224 63.8
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 2.3e-72 276.2 239 64.9
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 3.1e-72 275.8 237 64.1
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.2e-71 273.9 236 64.4
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 2.0e-71 273.1 249 60.2
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 9.9e-71 270.8 237 61.6
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.4e-69 266.9 225 63.1
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.4e-69 266.9 178 74.2
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 3.6e-65 252.3 236 58.9
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.4e-64 250.4 234 57.7
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.3e-62 243.8 225 56.4
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 8.4e-62 241.1 167 71.9
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 2.4e-61 239.6 231 58.0
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 5.4e-61 238.4 231 59.7
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 3.5e-60 235.7 229 56.8
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 3.5e-60 235.7 180 66.1
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 3.5e-60 235.7 187 65.8
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 3.9e-59 232.3 142 79.6
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 6.6e-59 231.5 125 97.6
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 5.6e-58 228.4 146 78.8
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 2.4e-56 223.0 139 79.1
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.2e-54 216.5 139 77.0
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 1.2e-47 194.1 136 74.3
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 9.9e-47 191.0 228 52.6
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 1.3e-43 180.6 191 50.8
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 2.3e-43 179.9 95 86.3
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 1.1e-42 177.6 229 49.8
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 1.5e-42 177.2 190 52.6
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 3.3e-42 176.0 198 47.5
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 3.8e-38 162.5 177 46.3
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 8.4e-38 161.4 140 65.0
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 9.3e-37 157.9 131 64.1
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 1.5e-34 150.6 201 41.8
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 1.1e-29 134.4 158 44.9
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 5.1e-27 125.6 223 39.5
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 6.9e-24 115.2 90 68.9
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 1.5e-18 97.4 57 86.0
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 9.1e-16 88.2 91 60.4
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 6.1e-12 75.5 142 26.1
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.0e-11 74.7 182 26.4
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.0e-11 73.2 232 28.4


User provided reference genes

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