Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-169 599.7 387 100.0
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 4.5e-129 465.3 460 76.5
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 2.6e-124 449.5 460 75.2
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 7.8e-121 438.0 296 100.0
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 3.6e-118 429.1 464 72.2
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 4.4e-116 422.2 466 69.5
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 5.8e-116 421.8 465 69.5
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 2.2e-115 419.9 245 100.0
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 8.3e-115 417.9 464 71.3
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 4.1e-114 415.6 466 68.7
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 9.2e-114 414.5 457 69.6
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 5.1e-112 408.7 457 69.6
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 5.6e-111 405.2 482 64.1
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 5.6e-111 405.2 482 64.1
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 5.8e-108 395.2 467 64.2
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 3.0e-104 382.9 469 67.0
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 5.6e-95 352.1 473 60.7
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.6e-94 350.5 477 62.1
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 2.4e-93 346.7 477 62.1
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 4.9e-83 312.4 406 64.5
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.6e-78 297.4 486 57.2
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 9.0e-77 291.6 466 57.1
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 2.6e-76 290.0 461 54.4
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 3.0e-64 250.0 379 52.8
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 4.3e-63 246.1 415 50.6
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 7.4e-63 245.4 458 52.4
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 3.1e-61 240.0 476 50.8
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 4.1e-61 239.6 409 49.4
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 5.3e-61 239.2 399 52.6
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 6.9e-61 238.8 413 48.9
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 6.9e-61 238.8 412 52.7
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 9.0e-61 238.4 412 49.3
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 9.0e-61 238.4 394 52.0
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 9.0e-61 238.4 430 44.9
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.5e-60 237.7 422 50.0
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.5e-60 237.7 405 47.9
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.0e-60 237.3 423 46.8
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.6e-60 236.9 420 49.3
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 2.6e-60 236.9 426 50.7
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 3.4e-60 236.5 419 52.3
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.5e-60 236.1 413 50.1
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 4.5e-60 236.1 421 45.4
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 7.7e-60 235.3 422 47.2
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 7.7e-60 235.3 415 47.0
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.0e-59 235.0 176 73.9
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.0e-59 235.0 427 50.1
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 1.0e-59 235.0 412 52.2
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.3e-59 234.6 415 49.4
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.3e-59 234.6 422 50.2
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.7e-59 234.2 415 49.2
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 3.8e-59 233.0 344 57.6
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 3.8e-59 233.0 346 53.8
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.0e-59 232.6 413 49.2
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 5.0e-59 232.6 413 49.6
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.5e-59 232.3 466 47.4
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 6.5e-59 232.3 346 53.5
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-58 231.5 499 44.3
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.4e-58 231.1 400 51.2
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.4e-58 231.1 419 46.1
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 2.5e-58 230.3 427 44.7
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 2.5e-58 230.3 440 44.8
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 3.2e-58 229.9 417 47.5
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 5.5e-58 229.2 431 46.4
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 9.4e-58 228.4 472 48.1
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.6e-57 227.6 428 41.6
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.6e-57 227.6 413 48.9
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.6e-57 227.6 426 49.1
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.1e-57 227.3 419 44.6
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.7e-57 226.9 434 45.2
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.7e-57 226.9 428 47.7
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.7e-57 226.9 415 46.7
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 3.6e-57 226.5 333 58.9
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 4.6e-57 226.1 427 46.1
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 4.6e-57 226.1 454 41.9
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.1e-57 225.7 420 48.1
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 2.3e-56 223.8 422 48.3
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 2.3e-56 223.8 339 54.9
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 3.9e-56 223.0 338 55.6
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 6.7e-56 222.2 426 46.2
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.1e-55 221.5 426 46.5
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 4.3e-55 219.5 333 53.5
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 7.4e-55 218.8 389 48.8
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 9.7e-55 218.4 327 52.6
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.2e-54 217.2 352 47.2
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.1e-53 214.9 411 47.9
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.4e-53 213.8 328 52.1
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 5.3e-53 212.6 353 52.7
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.3e-53 212.6 348 52.3
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 3.4e-52 209.9 323 48.0
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 4.5e-52 209.5 388 51.5
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 4.5e-52 209.5 359 50.1
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.7e-52 208.8 412 46.1
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 1.3e-51 208.0 161 70.2
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 2.9e-51 206.8 282 54.6
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.8e-51 206.5 269 53.2
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.9e-50 204.1 291 51.2
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 7.2e-50 202.2 269 52.4
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 7.9e-49 198.7 340 49.7
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 7.9e-49 198.7 340 49.7
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 5.1e-48 196.1 344 50.9
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 6.7e-48 195.7 379 42.0
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 9.7e-47 191.8 162 67.9
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 2.2e-46 190.7 350 50.0
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.2e-46 190.7 305 46.6
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 3.7e-46 189.9 398 46.2
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 8.2e-46 188.7 309 46.6
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 5.3e-45 186.0 408 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 3.2e-42 176.8 300 54.3
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 8.2e-38 162.2 610 32.6
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 9.7e-31 138.7 141 56.0
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 1.4e-29 134.8 323 44.3
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 7.7e-28 129.0 388 34.5
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 3.2e-26 123.6 233 51.1
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 1.5e-23 114.8 66 80.3
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.4e-21 106.3 62 79.0
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.2e-20 105.1 308 37.3
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 1.6e-20 104.8 103 62.1
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 7.7e-20 102.4 288 29.9
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 2.3e-19 100.9 183 43.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.2e-15 88.6 66 66.7
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.7e-14 84.7 87 57.5
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.2e-14 84.3 119 48.7
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 2.8e-14 84.0 74 68.9
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 5.9e-12 76.3 77 61.0
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.6e-10 69.7 85 51.8
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 8.0e-09 65.9 61 60.7


User provided reference genes

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