Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15120 Brassica carinata HOM05D003736 ORTHO05D023223 1.4e-40 169.1 82 100.0
BcaC08g46246 Brassica carinata HOM05D003736 ORTHO05D023223 1.4e-40 169.1 82 100.0
BcaC08g46199 Brassica carinata HOM05D003736 ORTHO05D004451 1.6e-36 155.6 82 93.9
C06p42280 Brassica napus HOM05D003736 ORTHO05D004451 1.6e-36 155.6 82 93.9
A07p34300 Brassica napus HOM05D003736 ORTHO05D004451 8.1e-36 153.3 79 93.7
C06p41850 Brassica napus HOM05D003736 ORTHO05D023223 5.8e-34 147.1 71 100.0
BolC6t39201H Brassica oleracea HOM05D003736 ORTHO05D004451 1.7e-33 145.6 74 95.9
BraA07t31060Z Brassica rapa HOM05D003736 ORTHO05D004451 4.5e-26 120.9 60 98.3
BcaB05g24312 Brassica carinata HOM05D003736 ORTHO05D004451 5.8e-26 120.6 83 77.1
Thhalv10018382m.g Eutrema salsugineum HOM05D003736 ORTHO05D004451 6.0e-23 110.5 82 76.8
AL2G26460 Arabidopsis lyrata HOM05D003736 ORTHO05D004451 7.9e-23 110.2 81 72.8
BcaC08g46040 Brassica carinata HOM05D003736 ORTHO05D004451 1.1e-21 106.3 79 73.4
BcaB03g15372 Brassica carinata HOM05D003736 ORTHO05D004451 2.6e-18 95.1 84 64.3
Aa31LG4G12270 Aethionema arabicum HOM05D003736 ORTHO05D004451 1.6e-15 85.9 84 63.1
C06p38390 Brassica napus HOM05D003736 ORTHO05D004451 2.3e-14 82.0 68 70.6
BolC6t38938H Brassica oleracea HOM05D003736 ORTHO05D004451 2.3e-14 82.0 68 70.6
A07p32420 Brassica napus HOM05D003736 ORTHO05D004451 5.1e-14 80.9 68 69.1
BraA07t30865Z Brassica rapa HOM05D003736 ORTHO05D004451 5.1e-14 80.9 68 69.1
THA.LOC104825541 Tarenaya hassleriana HOM05D003736 ORTHO05D004451 1.1e-11 73.2 61 60.7
Ca_25123_v3 Cicer arietinum L. HOM05D003736 ORTHO05D004451 6.9e-11 70.5 83 48.2
Sc11g0000810 Simmondsia chinensis HOM05D003736 ORTHO05D004451 9.0e-11 70.1 83 51.8
Lalb_Chr12g0204131 Lupinus albus HOM05D003736 ORTHO05D004451 1.2e-10 69.7 83 49.4
GSVIVG01000593001 Vitis vinifera HOM05D003736 ORTHO05D004451 2.0e-10 68.9 61 57.4
TAR371G0843 Trochodendron aralioides HOM05D003736 ORTHO05D004451 3.4e-10 68.2 81 48.1
Cc11_g16210 Coffea canephora HOM05D003736 ORTHO05D004451 5.8e-10 67.4 62 54.8
RcHm_v2.0_Chr4g0432281 Rosa chinensis HOM05D003736 ORTHO05D004451 5.8e-10 67.4 82 46.3
Glyma.11G245000 Glycine max HOM05D003736 ORTHO05D004451 1.0e-09 66.6 82 48.8
FvH4_4g25091 Fragaria vesca HOM05D003736 ORTHO05D004451 1.3e-09 66.2 82 45.1
FAN22G1426 Fragaria x ananassa HOM05D003736 ORTHO05D004451 1.3e-09 66.2 82 45.1
FAN22G2110 Fragaria x ananassa HOM05D003736 ORTHO05D004451 1.3e-09 66.2 82 45.1
Gohir.D02G155600 Gossypium hirsutum HOM05D003736 ORTHO05D004451 1.3e-09 66.2 82 50.0
Gorai.005G174500 Gossypium raimondii HOM05D003736 ORTHO05D004451 1.3e-09 66.2 82 50.0
FAN17G0727 Fragaria x ananassa HOM05D003736 ORTHO05D004451 1.7e-09 65.9 59 50.8
Glyma.18G012000 Glycine max HOM05D003736 ORTHO05D004451 1.7e-09 65.9 82 48.8
VMungo0251G0097 Vigna mungo HOM05D003736 ORTHO05D004451 1.7e-09 65.9 82 47.6
Duzib268G0144 Durio zibethinus HOM05D003736 ORTHO05D004451 2.2e-09 65.5 82 48.8
Thecc.02G268200 Theobroma cacao HOM05D003736 ORTHO05D004451 2.2e-09 65.5 82 48.8
arahy.Tifrunner.gnm1.ann1.N26GU2 Arachis hypogaea HOM05D003736 ORTHO05D004451 2.9e-09 65.1 84 44.0
Duzib248G1487 Durio zibethinus HOM05D003736 ORTHO05D004451 2.9e-09 65.1 81 46.9
Lj6g0025031 Lotus japonicus HOM05D003736 ORTHO05D004451 2.9e-09 65.1 82 50.0
Ciclev10031198m.g Citrus clementina HOM05D003736 ORTHO05D004451 3.8e-09 64.7 82 47.6
Lalb_Chr08g0230831 Lupinus albus HOM05D003736 ORTHO05D004451 3.8e-09 64.7 84 47.6
Potri.015G009400 Populus trichocarpa HOM05D003736 ORTHO05D004451 3.8e-09 64.7 81 45.7
Cfa009267 Carpinus fangiana HOM05D003736 ORTHO05D004451 5.0e-09 64.3 82 47.6
Gohir.A03G131600 Gossypium hirsutum HOM05D003736 ORTHO05D004451 5.0e-09 64.3 82 48.8
Medtr3g086300 Medicago truncatula HOM05D003736 ORTHO05D004451 5.0e-09 64.3 82 47.6
Cpa.g.sc33.92 Carica papaya HOM05D003736 ORTHO05D004451 6.5e-09 63.9 82 48.8
FAN12G3222 Fragaria x ananassa HOM05D003736 ORTHO05D004451 6.5e-09 63.9 80 45.0
Gohir.D05G312766 Gossypium hirsutum HOM05D003736 ORTHO05D004451 6.5e-09 63.9 81 46.9
Gorai.009G334300 Gossypium raimondii HOM05D003736 ORTHO05D004451 6.5e-09 63.9 81 46.9
TPR.G20619 Trifolium pratense HOM05D003736 ORTHO05D004451 6.5e-09 63.9 82 46.3
TWI36G0960 Tripterygium wilfordii HOM05D003736 ORTHO05D004451 6.5e-09 63.9 83 45.8
CDE04G0925 Ceratophyllum demersum HOM05D003736 ORTHO05D004451 1.1e-08 63.2 81 45.7
Gohir.A05G311800 Gossypium hirsutum HOM05D003736 ORTHO05D004451 1.1e-08 63.2 81 46.9
Duzib251G0873 Durio zibethinus HOM05D003736 ORTHO05D004451 1.4e-08 62.8 82 47.6
FAN17G0699 Fragaria x ananassa HOM05D003736 ORTHO05D004451 1.4e-08 62.8 47 57.4
Phvul.002G253200 Phaseolus vulgaris HOM05D003736 ORTHO05D004451 1.4e-08 62.8 82 46.3
AL5G14810 Arabidopsis lyrata HOM05D003736 ORTHO05D004451 1.9e-08 62.4 81 48.1
MD13G1106500 Malus domestica HOM05D003736 ORTHO05D004451 1.9e-08 62.4 82 46.3
TWI18G1196 Tripterygium wilfordii HOM05D003736 ORTHO05D004451 1.9e-08 62.4 83 47.0
TWI75G1115 Tripterygium wilfordii HOM05D003736 ORTHO05D004451 1.9e-08 62.4 83 45.8
Thhalv10003973m.g Eutrema salsugineum HOM05D003736 ORTHO05D004451 2.5e-08 62.0 81 45.7
Prupe.1G239800 Prunus persica HOM05D003736 ORTHO05D004451 2.5e-08 62.0 83 45.8
Oeu059783.1 Olea europaea HOM05D003736 ORTHO05D004451 3.2e-08 61.6 81 43.2
Phvul.002G253100 Phaseolus vulgaris HOM05D003736 ORTHO05D004451 3.2e-08 61.6 82 46.3
Sp2g15300 Schrenkiella parvula HOM05D003736 ORTHO05D004451 3.2e-08 61.6 81 48.1
ATR0824G030 Amborella trichopoda HOM05D003736 ORTHO05D004451 4.2e-08 61.2 81 48.1
Aqoxy3G01356 Aquilegia oxysepala HOM05D003736 ORTHO05D004451 4.2e-08 61.2 81 44.4
CiPaw.05G176100 Carya illinoinensis HOM05D003736 ORTHO05D004451 4.2e-08 61.2 82 46.3
MD16G1106600 Malus domestica HOM05D003736 ORTHO05D004451 4.2e-08 61.2 82 45.1
THA.LOC104805262 Tarenaya hassleriana HOM05D003736 ORTHO05D004451 4.2e-08 61.2 82 48.8
Atru.chr11.2196 Acer truncatum HOM05D003736 ORTHO05D023223 5.5e-08 60.8 81 44.4
Dinv11025 Davidia involucrata HOM05D003736 ORTHO05D004451 7.1e-08 60.5 82 45.1
ECA234G0585 Erigeron canadensis HOM05D003736 ORTHO05D004451 7.1e-08 60.5 60 51.7
Lj3C1063T14 Lonicera japonica HOM05D003736 ORTHO05D004451 7.1e-08 60.5 82 45.1
Rhsim12G0037900 Rhododendron simsii HOM05D003736 ORTHO05D004451 7.1e-08 60.5 81 45.7
Manes.12G019000 Manihot esculenta HOM05D003736 ORTHO05D004451 9.3e-08 60.1 81 42.0
BcaC03g17315 Brassica carinata HOM05D003736 ORTHO05D004451 1.2e-07 59.7 82 47.6
C02p52620 Brassica napus HOM05D003736 ORTHO05D004451 1.2e-07 59.7 82 47.6
BolC2t11337H Brassica oleracea HOM05D003736 ORTHO05D004451 1.2e-07 59.7 82 47.6
CDE07G2065 Ceratophyllum demersum HOM05D003736 ORTHO05D004451 1.2e-07 59.7 81 44.4
ClCG05G026150 Citrullus lanatus HOM05D003736 ORTHO05D004451 1.2e-07 59.7 81 45.7
Actinidia08111 Actinidia chinensis HOM05D003736 ORTHO05D004451 1.6e-07 59.3 81 43.2
A02p34270 Brassica napus HOM05D003736 ORTHO05D004451 1.6e-07 59.3 83 47.0
Carub.0005s0398 Capsella rubella HOM05D003736 ORTHO05D004451 1.6e-07 59.3 81 46.9
CARHR147100 Cardamine hirsuta HOM05D003736 ORTHO05D004451 1.6e-07 59.3 81 48.1
CsaV3_5G030710 Cucumis sativus L. HOM05D003736 ORTHO05D004451 1.6e-07 59.3 81 45.7
unitig_21.g20399 Utricularia gibba HOM05D003736 ORTHO05D004451 1.6e-07 59.3 58 51.7
Glyma.05G172400 Glycine max HOM05D003736 ORTHO05D004451 2.1e-07 58.9 82 45.1
Lalb_Chr07g0185561 Lupinus albus HOM05D003736 ORTHO05D004451 2.1e-07 58.9 83 44.6
Sed0008937 Sechium edule HOM05D003736 ORTHO05D004451 2.1e-07 58.9 81 45.7
HanXRQChr17g0569191 Helianthus annuus HOM05D003736 ORTHO05D004451 2.7e-07 58.5 60 50.0
Lj6A817T57 Lonicera japonica HOM05D003736 ORTHO05D004451 3.5e-07 58.2 61 47.5
A06p42250 Brassica napus HOM05D003736 ORTHO05D004451 4.6e-07 57.8 60 50.0
C07p35110 Brassica napus HOM05D003736 ORTHO05D004451 4.6e-07 57.8 60 50.0
BolC7t44039H Brassica oleracea HOM05D003736 ORTHO05D004451 4.6e-07 57.8 60 50.0
BraA06t27141Z Brassica rapa HOM05D003736 ORTHO05D004451 4.6e-07 57.8 60 50.0
Hma1.2p1_0815F.1_g222820 Hydrangea macrophylla HOM05D003736 ORTHO05D004451 4.6e-07 57.8 81 43.2
Os12g0284000 Oryza sativa ssp. japonica HOM05D003736 ORTHO05D004451 6.1e-07 57.4 81 48.1
PGR102G2024 Punica granatum HOM05D003736 ORTHO05D004451 6.1e-07 57.4 81 45.7
HanXRQChr12g0385841 Helianthus annuus HOM05D003736 ORTHO05D004451 7.9e-07 57.0 83 45.8
Oeu038656.2 Olea europaea HOM05D003736 ORTHO05D004451 1.0e-06 56.6 81 40.7
Nitab4.5_0000041g0150 Nicotiana tabacum HOM05D003736 ORTHO05D004451 1.3e-06 56.2 61 49.2
CSS0013508 Camellia sinensis var. sinensis HOM05D003736 ORTHO05D004451 1.8e-06 55.8 82 41.5
PGR119G0120 Punica granatum HOM05D003736 ORTHO05D004451 1.8e-06 55.8 49 57.1
Migut.E00225 Erythranthe guttata HOM05D003736 ORTHO05D004451 2.3e-06 55.5 41 63.4
Nn6g34029 Nelumbo nucifera HOM05D003736 ORTHO05D023223 2.3e-06 55.5 58 51.7
DCAR_026491 Daucus carota HOM05D003736 ORTHO05D004451 3.0e-06 55.1 81 43.2
Eucgr.B03238 Eucalyptus grandis HOM05D003736 ORTHO05D004451 3.0e-06 55.1 81 42.0
BcaB07g30622 Brassica carinata HOM05D003736 ORTHO05D004451 3.9e-06 54.7 81 46.9
BraA02t08442Z Brassica rapa HOM05D003736 ORTHO05D004451 3.9e-06 54.7 82 46.3
Peaxi162Scf00128g00643 Petunia axillaris HOM05D003736 ORTHO05D004451 3.9e-06 54.7 81 39.5
PSO017G5809 Papaver somniferum HOM05D003736 ORTHO05D004451 5.1e-06 54.3 81 42.0
PSO478G2199 Papaver somniferum HOM05D003736 ORTHO05D004451 5.1e-06 54.3 81 42.0
Solyc05g014030.3 Solanum lycopersicum HOM05D003736 ORTHO05D004451 5.1e-06 54.3 60 50.0
Sopen05g008980 Solanum pennellii HOM05D003736 ORTHO05D004451 5.1e-06 54.3 60 50.0
PGSC0003DMG400010739 Solanum tuberosum HOM05D003736 ORTHO05D004451 5.1e-06 54.3 60 50.0
Nitab4.5_0007823g0010 Nicotiana tabacum HOM05D003736 ORTHO05D004451 6.7e-06 53.9 72 40.3
SalBow8G5487 Salvia bowleyana HOM05D003736 ORTHO05D004451 6.7e-06 53.9 41 58.5
BcaB07g30238 Brassica carinata HOM05D003736 ORTHO05D004451 8.7e-06 53.5 81 46.9
BcaC04g21403 Brassica carinata HOM05D003736 ORTHO05D004451 8.7e-06 53.5 81 46.9
BolC9t56068H Brassica oleracea HOM05D003736 ORTHO05D004451 8.7e-06 53.5 81 46.9
Oeu025406.1 Olea europaea HOM05D003736 ORTHO05D004451 8.7e-06 53.5 60 48.3
vmacro01108 Vaccinium macrocarpon HOM05D003736 ORTHO05D004451 8.7e-06 53.5 81 42.0
VMungo0251G1793 Vigna mungo HOM05D003736 ORTHO05D004451 8.7e-06 53.5 82 43.9


User provided reference genes

Program Settings