Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15057 Brassica carinata HOM05D016015 ORTHO05D024088 1.8e-44 182.2 93 100.0
BcaB05g22647 Brassica carinata HOM05D016015 ORTHO05D024088 9.5e-41 169.9 91 96.7
BcaB05g23037 Brassica carinata HOM05D016015 ORTHO05D024088 2.6e-38 161.8 87 96.6
BcaB07g32608 Brassica carinata HOM05D016015 ORTHO05D024088 6.2e-32 140.6 77 93.5
BcaB03g14106 Brassica carinata HOM05D016015 ORTHO05D024088 1.6e-24 115.9 67 92.5
BcaB01g01891 Brassica carinata HOM05D000141 ORTHO05D001968 8.9e-23 110.2 67 91.0
BcaC04g21383 Brassica carinata HOM05D000141 ORTHO05D001968 6.4e-21 104.0 67 83.6
A09p25540 Brassica napus HOM05D000141 ORTHO05D001968 6.4e-21 104.0 67 83.6
C09p32450 Brassica napus HOM05D000141 ORTHO05D001968 6.4e-21 104.0 67 83.6
BolC9t56090H Brassica oleracea HOM05D000141 ORTHO05D001968 6.4e-21 104.0 67 83.6
BraA09t38129Z Brassica rapa HOM05D000141 ORTHO05D001968 6.4e-21 104.0 67 83.6
Sp6g03800 Schrenkiella parvula HOM05D000141 ORTHO05D001968 9.2e-20 100.1 67 82.1
CARHR252360 Cardamine hirsuta HOM05D000141 ORTHO05D001968 2.1e-19 99.0 67 82.1
AL6G48790 Arabidopsis lyrata HOM05D000141 ORTHO05D001968 2.7e-19 98.6 67 80.6
Carub.0006s3314 Capsella rubella HOM05D000141 ORTHO05D001968 4.6e-19 97.8 67 79.1
AL7G32840 Arabidopsis lyrata HOM05D000141 ORTHO05D001968 7.8e-19 97.1 66 77.3
AT4G21270 Arabidopsis thaliana HOM05D000141 ORTHO05D001968 2.3e-18 95.5 66 74.2
Thhalv10028442m.g Eutrema salsugineum HOM05D000141 ORTHO05D001968 3.0e-18 95.1 67 79.1
CARHR227850 Cardamine hirsuta HOM05D000141 ORTHO05D001968 5.1e-18 94.4 66 75.8
BcaB05g23695 Brassica carinata HOM05D000141 ORTHO05D001968 1.1e-17 93.2 67 76.1
AT4G05190 Arabidopsis thaliana HOM05D000141 ORTHO05D001968 7.3e-17 90.5 77 63.6
Aa31LG9G9250 Aethionema arabicum HOM05D000141 ORTHO05D001968 2.8e-16 88.6 67 74.6
Carub.0007s2016 Capsella rubella HOM05D000141 ORTHO05D001968 3.6e-16 88.2 67 73.1
Sp7g19350 Schrenkiella parvula HOM05D000141 ORTHO05D001968 3.6e-16 88.2 66 69.7
THA.LOC104806262 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 5.2e-15 84.3 67 68.7
THA.LOC104812529 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 7.6e-14 80.5 67 67.2
Cpa.g.sc81.9 Carica papaya HOM05D000141 ORTHO05D001968 9.3e-12 73.6 67 55.2
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 3.0e-10 68.6 68 58.8
Cfa016410 Carpinus fangiana HOM05D000141 ORTHO05D001968 1.5e-09 66.2 68 57.4
Rhsim02G0115000 Rhododendron simsii HOM05D000141 ORTHO05D001968 3.3e-09 65.1 68 50.0
MD10G1311800 Malus domestica HOM05D000141 ORTHO05D001968 9.6e-09 63.5 68 54.4
CSS0038905 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 2.1e-08 62.4 68 51.5
CSS0042879 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 2.1e-08 62.4 68 51.5
Lj1C1222T7 Lonicera japonica HOM05D000141 ORTHO05D001968 2.8e-08 62.0 68 48.5
CANSAT56G1430 Cannabis sativa HOM05D000141 ORTHO05D001968 6.2e-08 60.8 69 53.6
CiPaw.09G080400 Carya illinoinensis HOM05D000141 ORTHO05D001968 8.1e-08 60.5 68 52.9
MD05G1336300 Malus domestica HOM05D000141 ORTHO05D001968 8.1e-08 60.5 68 51.5
Sed0006809 Sechium edule HOM05D000141 ORTHO05D001968 8.1e-08 60.5 66 48.5
DCAR_024924 Daucus carota HOM05D000141 ORTHO05D001968 1.1e-07 60.1 69 50.7
GSVIVG01007336001 Vitis vinifera HOM05D000141 ORTHO05D001968 1.1e-07 60.1 67 50.7
arahy.Tifrunner.gnm1.ann1.KY6G5X Arachis hypogaea HOM05D000141 ORTHO05D001968 1.4e-07 59.7 76 44.7
Ciclev10014313m.g Citrus clementina HOM05D000141 ORTHO05D001968 1.4e-07 59.7 67 49.3
MELO3C002509.2 Cucumis melo HOM05D000141 ORTHO05D001968 1.8e-07 59.3 58 51.7
Hma1.2p1_1682F.1_g297330 Hydrangea macrophylla HOM05D000141 ORTHO05D001968 1.8e-07 59.3 70 51.4
Lj6g0000863 Lotus japonicus HOM05D000141 ORTHO05D001968 1.8e-07 59.3 92 46.7
Dinv18940 Davidia involucrata HOM05D000141 ORTHO05D001968 3.1e-07 58.5 68 51.5
arahy.Tifrunner.gnm1.ann1.R4UZW9 Arachis hypogaea HOM05D000141 ORTHO05D001968 4.0e-07 58.2 76 43.4
BcaB06g26130 Brassica carinata HOM05D016015 ORTHO05D091432 4.0e-07 58.2 66 57.6
Ca_00206_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001968 4.0e-07 58.2 70 51.4
ClCG03G005120 Citrullus lanatus HOM05D000141 ORTHO05D001968 4.0e-07 58.2 58 50.0
CsaV3_1G011320 Cucumis sativus L. HOM05D000141 ORTHO05D001968 4.0e-07 58.2 58 50.0
Dinv17848 Davidia involucrata HOM05D000141 ORTHO05D001968 4.0e-07 58.2 68 47.1
PSO210G7308 Papaver somniferum HOM05D000141 ORTHO05D001968 5.3e-07 57.8 55 54.5
PSO832G1105 Papaver somniferum HOM05D000141 ORTHO05D001968 5.3e-07 57.8 55 54.5
Thecc.06G208600 Theobroma cacao HOM05D000141 ORTHO05D001968 5.3e-07 57.8 67 50.7
Lj4g0020235 Lotus japonicus HOM05D000141 ORTHO05D001968 6.9e-07 57.4 84 44.0
Prupe.4G029200 Prunus persica HOM05D000141 ORTHO05D001968 1.2e-06 56.6 68 48.5
CiPaw.10G066600 Carya illinoinensis HOM05D000141 ORTHO05D001968 1.5e-06 56.2 70 50.0
TWI63G0112 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 1.5e-06 56.2 68 50.0
vmacro15840 Vaccinium macrocarpon HOM05D000141 ORTHO05D001968 1.5e-06 56.2 70 45.7
Sed0021398 Sechium edule HOM05D000141 ORTHO05D001968 3.4e-06 55.1 58 48.3
Potri.011G031200 Populus trichocarpa HOM05D000141 ORTHO05D001968 5.8e-06 54.3 67 50.7
BcaB05g24209 Brassica carinata HOM05D016015 ORTHO05D090501 9.9e-06 53.5 62 50.0
Gohir.A05G167600 Gossypium hirsutum HOM05D000141 ORTHO05D001968 9.9e-06 53.5 63 52.4
QL93p0073_1235 Quercus lobata HOM05D000141 ORTHO05D001968 9.9e-06 53.5 69 52.2


User provided reference genes

Program Settings