Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15049 Brassica carinata HOM05D004052 ORTHO05D004694 2.6e-84 315.5 176 100.0
BcaB03g16595 Brassica carinata HOM05D004052 ORTHO05D004694 6.8e-72 274.2 175 86.9
BcaB03g15566 Brassica carinata HOM05D004052 ORTHO05D004694 3.0e-51 205.7 123 89.4
BcaB03g15581 Brassica carinata HOM05D004052 ORTHO05D004694 5.0e-51 204.9 123 89.4
BcaB03g15574 Brassica carinata HOM05D004052 ORTHO05D004694 7.3e-50 201.1 164 70.7
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 4.1e-45 185.3 154 72.1
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 3.5e-44 182.2 145 74.5
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 1.5e-42 176.8 146 70.5
BcaB03g15788 Brassica carinata HOM05D004052 ORTHO05D004694 2.5e-42 176.0 93 97.8
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 2.1e-41 172.9 128 78.1
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 4.7e-41 171.8 144 68.8
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.1e-40 170.6 154 67.5
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.4e-40 170.2 126 79.4
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.3e-40 169.5 142 72.5
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 5.8e-39 164.9 144 69.4
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.7e-38 163.3 144 68.8
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 1.7e-38 163.3 144 68.8
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 4.9e-38 161.8 143 69.9
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 2.4e-37 159.5 143 69.2
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 7.1e-37 157.9 138 68.8
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 2.1e-36 156.4 127 75.6
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 5.1e-35 151.8 120 75.0
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 1.1e-34 150.6 124 75.0
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 9.5e-34 147.5 123 73.2
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 6.8e-32 141.4 143 65.0
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 4.6e-28 128.6 109 73.4
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 4.6e-28 128.6 109 73.4
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 7.8e-28 127.9 142 65.5
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 7.8e-28 127.9 142 65.5
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 7.8e-28 127.9 142 65.5
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 8.7e-27 124.4 123 68.3
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 8.1e-25 117.9 152 50.0
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.5e-23 113.6 154 50.6
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 2.6e-23 112.8 131 55.0
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 9.9e-23 110.9 135 53.3
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 1.3e-22 110.5 155 51.6
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 6.4e-22 108.2 155 50.3
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 6.4e-22 108.2 155 50.3
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.2e-21 105.9 154 50.0
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 3.2e-21 105.9 152 49.3
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 1.3e-19 100.5 123 55.3
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 3.3e-18 95.9 119 51.3
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 2.8e-17 92.8 152 46.7
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.8e-16 90.1 123 52.0
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 4.9e-14 82.0 195 33.8
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 1.1e-13 80.9 189 36.5
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 5.4e-13 78.6 192 35.4
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 3.5e-12 75.9 193 36.3
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 6.0e-12 75.1 171 38.6
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 6.0e-12 75.1 199 35.2
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 1.0e-11 74.3 134 45.5
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.3e-11 73.9 171 38.0
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 1.3e-11 73.9 142 36.6
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 8.7e-11 71.2 188 36.2
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 8.7e-11 71.2 139 41.7
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-10 70.9 187 33.7
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.1e-10 70.9 218 32.6
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.5e-10 70.5 191 34.6
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.5e-10 70.5 190 35.3
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 1.5e-10 70.5 189 33.3
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.5e-10 70.5 193 32.1
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.9e-10 70.1 190 35.3
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 2.5e-10 69.7 144 42.4
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 3.3e-10 69.3 183 36.1
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 4.3e-10 68.9 224 31.7
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 5.6e-10 68.6 166 34.9
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 7.4e-10 68.2 175 33.7
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 7.4e-10 68.2 175 33.7
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 7.4e-10 68.2 189 34.4
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 7.4e-10 68.2 189 34.4
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 7.4e-10 68.2 173 34.7
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 1.6e-09 67.0 185 31.9
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 1.6e-09 67.0 148 36.5
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.1e-09 66.6 190 32.1
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 2.8e-09 66.2 160 38.1
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.8e-09 66.2 183 34.4
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 3.7e-09 65.9 159 38.4
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 3.7e-09 65.9 160 35.6
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 4.8e-09 65.5 154 35.7
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 6.2e-09 65.1 158 36.7
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 8.1e-09 64.7 170 37.6
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 8.1e-09 64.7 161 36.6
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 8.1e-09 64.7 155 37.4
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 1.1e-08 64.3 183 37.2
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.1e-08 64.3 152 35.5
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.8e-08 63.5 169 32.5
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.4e-08 63.2 146 38.4
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 2.4e-08 63.2 194 33.0
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 2.4e-08 63.2 180 33.3
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.1e-08 62.8 159 37.1
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 9.0e-08 61.2 147 38.1
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 1.2e-07 60.8 187 35.3
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 1.5e-07 60.5 162 35.8
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 2.0e-07 60.1 175 31.4
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 2.0e-07 60.1 180 28.3
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 2.6e-07 59.7 155 35.5
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.5e-07 58.9 141 38.3
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 5.8e-07 58.5 81 49.4
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.3e-06 57.4 136 39.7
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.7e-06 57.0 196 29.6
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 1.7e-06 57.0 136 39.7
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 2.2e-06 56.6 180 34.4
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 3.8e-06 55.8 175 34.3


User provided reference genes

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