Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.2e-281 972.6 508 100.0
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.3e-269 932.6 508 95.5
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.9e-268 928.7 509 95.3
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.2e-267 926.0 509 94.9
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.6e-267 925.6 509 95.3
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.6e-267 925.6 508 94.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 9.8e-257 889.8 520 89.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 8.6e-253 876.7 520 87.7
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 7.5e-249 863.6 520 85.6
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.9e-247 859.0 520 85.6
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 7.1e-239 830.5 516 82.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.8e-234 815.8 520 81.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.0e-221 773.5 515 78.6
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.5e-209 731.5 521 73.9
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 4.1e-154 548.9 521 57.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 3.3e-151 539.3 535 55.3
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 4.9e-147 525.4 539 53.6
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.9e-145 518.5 530 53.4
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.9e-144 515.8 544 52.9
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.5e-143 513.1 545 52.7
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 4.3e-143 512.3 533 54.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.0e-141 507.7 545 52.1
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 5.2e-141 505.4 549 52.1
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.2e-141 505.4 533 53.7
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.2e-140 504.2 535 52.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.6e-140 503.1 537 52.0
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.9e-139 498.8 545 52.7
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 8.3e-139 498.0 533 52.9
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.4e-138 497.3 548 51.6
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 2.7e-137 493.0 544 51.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 6.0e-137 491.9 544 51.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 6.0e-137 491.9 538 50.9
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.3e-136 490.7 531 51.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.6e-136 488.4 537 51.2
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.6e-136 488.0 533 51.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.9e-135 486.9 524 52.9
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.3e-135 486.1 547 52.3
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.3e-135 486.1 533 51.6
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 3.3e-135 486.1 546 51.6
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 5.6e-135 485.3 681 44.3
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-134 484.2 539 50.6
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.1e-134 483.4 536 50.6
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 2.8e-134 483.0 516 53.7
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.4e-133 480.7 527 51.8
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 1.8e-133 480.3 539 49.5
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.8e-133 480.3 542 51.1
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.1e-133 479.6 509 52.8
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 8.9e-133 478.0 541 49.9
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 9.2e-130 468.0 540 50.0
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.6e-129 467.2 513 52.0
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.7e-129 466.5 539 51.2
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.6e-129 465.7 539 51.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 7.8e-129 464.9 543 49.7
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-128 462.2 506 52.2
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.5e-127 460.7 537 49.2
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.6e-126 457.2 539 50.5
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.8e-126 456.4 539 51.2
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.7e-126 455.7 544 49.4
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.8e-125 453.8 514 51.0
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.3e-125 453.4 512 51.4
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 8.9e-125 451.4 511 50.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.6e-124 449.9 569 46.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.4e-124 449.1 512 50.8
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.7e-123 447.2 511 50.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.7e-123 447.2 534 49.3
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.7e-123 446.0 520 48.1
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 4.1e-122 442.6 536 50.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 7.1e-122 441.8 511 50.7
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.7e-120 437.2 534 49.1
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.1e-119 434.5 511 49.1
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 4.3e-119 432.6 458 51.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.1e-118 430.3 529 48.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 8.1e-118 428.3 536 47.9
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.4e-117 427.6 541 48.1
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 8.9e-117 424.9 534 47.4
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 8.9e-117 424.9 540 47.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 2.0e-116 423.7 537 46.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.6e-116 423.3 538 46.5
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 5.8e-116 422.2 502 50.6
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 5.8e-116 422.2 472 49.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 9.9e-116 421.4 493 50.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.9e-115 419.1 429 53.8
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 5.4e-114 415.6 534 46.3
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 5.4e-114 415.6 531 46.7
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.5e-113 412.9 438 50.9
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.0e-112 411.4 575 44.3
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 5.3e-109 399.1 510 46.3
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.9e-107 393.3 529 47.4
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.2e-100 371.3 521 43.6
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 9.9e-100 368.2 540 43.0
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.9e-99 366.7 431 48.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 3.2e-98 363.2 519 46.1
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 9.3e-98 361.7 469 45.8
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.9e-95 354.0 346 52.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 9.0e-93 345.1 540 40.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 7.6e-84 315.5 378 50.3
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 3.8e-83 313.2 309 54.4
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 3.1e-77 293.5 518 40.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.5e-76 289.7 537 38.0
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 7.2e-74 282.3 340 48.5
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.7e-73 280.4 330 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.9e-72 276.6 525 35.8
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.0e-71 274.2 550 35.3
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 7.4e-71 272.3 568 35.9
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.0e-68 264.2 467 38.1
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.8e-64 251.1 283 50.9
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.3e-63 246.9 317 45.4
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.0e-60 237.7 425 36.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.7e-55 218.8 266 48.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.7e-54 218.0 212 52.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.2e-54 217.6 252 49.2
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.1e-53 212.2 344 39.5
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 1.6e-52 211.5 267 46.4
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.5e-51 206.1 165 60.6
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 8.0e-49 199.1 415 35.2
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 5.0e-43 179.9 259 44.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.1e-41 174.5 251 45.4
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.0e-40 172.2 158 55.7
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.3e-38 165.2 336 37.2
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 2.8e-38 164.1 137 70.1
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.6e-35 152.9 161 49.1
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-34 152.1 160 50.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 5.2e-32 143.3 155 49.7
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.3e-30 138.7 123 60.2
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.4e-29 134.4 117 55.6
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.5e-28 130.6 143 49.7
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.7e-27 128.3 244 41.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.9e-27 127.1 170 43.5
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.2e-17 93.2 236 35.2
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.4e-16 92.0 233 35.6
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.8e-16 91.7 114 48.2
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-15 89.0 160 41.2
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.4e-13 82.0 109 47.7
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 5.2e-08 63.5 91 39.6
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 5.2e-08 63.5 91 39.6
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.9e-06 57.8 94 38.3


User provided reference genes

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