Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1621.7 994 100.0
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 0.0e+00 1431.4 1011 84.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1411.4 1001 85.2
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 0.0e+00 1400.6 918 87.5
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 0.0e+00 1392.5 928 86.5
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 0.0e+00 1384.4 1003 83.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 0.0e+00 1381.7 1017 83.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 0.0e+00 1332.4 1010 79.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 0.0e+00 1329.7 923 80.6
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 0.0e+00 1318.5 925 80.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 0.0e+00 1286.6 911 79.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 0.0e+00 1207.6 922 78.5
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1176.4 926 72.7
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 1.0e-292 1010.4 1034 60.1
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 923 65.3
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.5e-291 1005.7 923 65.3
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.8e-289 999.6 910 65.6
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 3.1e-286 988.8 944 62.5
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 7.0e-286 987.6 1005 59.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.6e-285 986.5 910 62.9
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.0e-284 983.8 1053 58.4
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.3e-284 983.4 900 63.9
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.5e-283 979.9 910 63.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.6e-282 976.5 1004 60.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 1.6e-282 976.5 912 64.5
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 6.1e-282 974.5 1055 56.8
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.0e-281 973.8 1013 59.6
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 4.0e-281 971.8 1006 58.9
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 8.8e-281 970.7 983 60.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 2.0e-280 969.5 1043 58.6
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 2.0e-280 969.5 999 58.6
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 5.7e-280 968.0 933 61.6
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.4e-278 963.4 923 60.0
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.4e-278 963.4 962 61.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.8e-278 963.0 885 62.5
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 7.0e-278 961.1 1022 57.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 3.5e-277 958.7 1022 57.0
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 4.5e-277 958.4 894 62.4
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.9e-276 955.7 915 62.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 7.2e-275 951.0 819 66.1
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 8.0e-274 947.6 900 62.6
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 8.0e-274 947.6 1019 59.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.0e-273 947.2 934 61.7
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.8e-273 946.4 906 62.4
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 3.0e-273 945.7 906 61.1
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 3.0e-273 945.7 960 60.2
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 4.0e-273 945.3 1050 56.3
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.6e-272 942.6 909 61.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 9.8e-272 940.6 912 62.0
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.2e-271 939.5 912 63.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 3.7e-271 938.7 915 60.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 6.3e-271 937.9 913 58.9
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-270 937.2 913 63.3
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.5e-269 932.2 903 61.7
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.6e-268 927.9 911 59.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.3e-267 924.5 914 58.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.7e-266 921.8 1016 56.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 8.0e-266 921.0 905 60.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 8.9e-265 917.5 932 58.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.2e-264 917.1 925 59.6
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.6e-264 916.0 1061 58.2
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 2.6e-264 916.0 929 58.6
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.2e-263 912.9 939 62.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.7e-261 906.0 903 60.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.5e-259 900.2 941 57.0
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 5.6e-259 898.3 952 58.5
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 9.5e-259 897.5 929 60.0
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.6e-258 896.7 1008 55.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 6.2e-258 894.8 951 57.5
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.8e-257 893.3 945 56.4
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.3e-257 892.9 929 58.1
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 6.8e-257 891.3 949 56.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 3.4e-256 889.0 997 55.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.9e-255 885.2 928 58.4
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.1e-254 882.1 914 61.3
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.6e-253 880.2 866 59.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.8e-253 877.9 999 54.2
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 3.3e-251 872.5 1027 52.7
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.2e-250 870.5 919 55.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.8e-250 869.4 920 55.9
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.3e-249 866.3 1020 54.7
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 8.9e-249 864.4 560 84.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.6e-245 853.6 1017 51.0
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 6.0e-245 851.7 917 59.3
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.5e-243 846.3 868 57.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 2.8e-242 842.8 1185 48.7
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.4e-241 839.7 862 55.3
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.2e-238 829.3 903 54.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.8e-237 824.7 869 53.9
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.3e-236 823.2 954 54.2
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-231 807.0 869 55.4
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.9e-231 806.2 905 54.3
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.1e-229 800.0 936 52.5
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 4.8e-226 788.9 914 51.0
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.7e-223 780.4 923 49.8
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.4e-223 778.5 696 62.9
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.3e-219 765.8 922 52.3
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.7e-213 746.5 923 51.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 3.4e-208 729.6 798 55.4
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 9.3e-206 721.5 1040 45.9
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.3e-202 708.8 616 63.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.6e-197 694.1 591 67.3
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.0e-196 689.9 591 65.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-189 667.5 617 61.8
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.7e-181 640.2 1031 45.7
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.2e-174 616.7 851 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 6.1e-173 612.5 936 42.2
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.3e-172 610.5 760 46.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.7e-168 597.0 918 42.3
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.4e-145 521.5 736 48.0
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 4.3e-142 510.0 869 40.2
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 6.2e-141 506.1 498 60.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 8.0e-141 505.8 457 64.3
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-138 498.0 532 53.9
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.9e-138 497.3 778 43.8
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 4.1e-129 466.8 840 37.1
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 6.4e-114 416.4 364 64.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 2.4e-100 371.3 818 35.7
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.6e-88 332.0 370 53.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.9e-71 274.2 749 33.4
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 5.7e-70 270.4 633 35.4
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 7.7e-67 260.0 422 40.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 6.7e-63 246.9 705 29.9
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 6.7e-63 246.9 201 67.2
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.0e-60 236.9 301 48.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 6.5e-50 203.8 222 55.9
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-49 203.0 179 63.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-38 166.4 242 44.2
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.9e-37 161.8 163 59.5
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.8e-31 142.5 160 55.0
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 2.0e-30 139.0 161 51.6
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.9e-25 122.5 130 53.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.8e-24 118.6 115 59.1
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.9e-18 98.2 64 76.6
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.5e-17 96.3 95 50.5
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.9e-17 95.9 51 88.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-12 79.7 81 49.4
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.6e-11 76.3 95 54.7
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 3.0e-10 72.0 92 62.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.5e-09 68.9 45 71.1
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.5e-09 68.9 45 71.1
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 9.6e-09 67.0 45 68.9
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 9.6e-09 67.0 45 68.9
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.1e-08 65.9 45 66.7
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 3.4e-06 58.5 38 71.1


User provided reference genes

Program Settings