Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 4.0e-37 157.5 76 100.0
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 2.2e-35 151.8 75 96.0
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 6.4e-35 150.2 75 94.7
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 6.4e-35 150.2 75 94.7
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 1.4e-34 149.1 75 94.7
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 7.0e-34 146.7 75 93.3
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 7.8e-33 143.3 75 89.3
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.0e-32 142.9 75 89.3
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 5.0e-32 140.6 75 89.3
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 6.8e-29 130.2 75 85.3
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.2e-28 129.4 75 85.3
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 2.0e-28 128.6 75 82.7
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 5.8e-28 127.1 75 80.0
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 7.5e-28 126.7 75 84.0
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 9.8e-28 126.3 75 82.7
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 2.2e-27 125.2 75 82.7
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 2.2e-27 125.2 75 82.7
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 2.2e-27 125.2 75 82.7
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 4.9e-27 124.0 75 81.3
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 6.4e-27 123.6 75 80.0
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 8.3e-27 123.2 75 82.7
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 8.3e-27 123.2 70 81.4
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.4e-26 122.5 75 82.7
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.4e-26 122.5 75 82.7
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 1.4e-26 122.5 75 80.0
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 2.4e-26 121.7 75 76.0
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 9.2e-26 119.8 70 77.1
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 1.2e-25 119.4 70 80.0
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 1.2e-25 119.4 74 74.3
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 2.0e-25 118.6 70 75.7
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 2.7e-25 118.2 75 72.0
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 3.5e-25 117.9 70 77.1
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 4.6e-25 117.5 70 75.7
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 6.0e-25 117.1 75 74.7
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 6.0e-25 117.1 70 75.7
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 7.8e-25 116.7 70 75.7
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.3e-24 115.9 72 70.8
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 1.3e-24 115.9 68 77.9
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.3e-24 115.2 68 75.0
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.0e-24 114.8 68 76.5
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 3.0e-24 114.8 68 73.5
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 3.0e-24 114.8 75 73.3
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 3.0e-24 114.8 70 72.9
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 5.0e-24 114.0 70 74.3
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 5.0e-24 114.0 74 70.3
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 5.0e-24 114.0 70 72.9
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 5.0e-24 114.0 70 72.9
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 6.6e-24 113.6 68 76.5
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 6.6e-24 113.6 70 75.7
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 8.6e-24 113.2 71 74.6
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 8.6e-24 113.2 68 75.0
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 8.6e-24 113.2 66 75.8
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 8.6e-24 113.2 66 75.8
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 8.6e-24 113.2 66 75.8
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.9e-23 112.1 70 71.4
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 1.9e-23 112.1 70 72.9
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 2.5e-23 111.7 75 69.3
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 2.5e-23 111.7 75 69.3
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 2.5e-23 111.7 72 68.1
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 3.3e-23 111.3 72 68.1
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 3.3e-23 111.3 72 68.1
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 3.3e-23 111.3 70 72.9
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 4.3e-23 110.9 70 70.0
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 1.2e-22 109.4 70 70.0
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 1.2e-22 109.4 70 72.9
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.6e-22 109.0 74 68.9
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.6e-22 109.0 74 68.9
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.6e-22 109.0 66 74.2
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 2.1e-22 108.6 68 70.6
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 2.8e-22 108.2 71 70.4
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 2.8e-22 108.2 70 72.9
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 4.7e-22 107.5 70 70.0
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 4.7e-22 107.5 75 66.7
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 4.7e-22 107.5 71 70.4
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 6.2e-22 107.1 70 70.0
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 1.1e-21 106.3 70 65.7
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 1.1e-21 106.3 70 70.0
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.4e-21 105.9 75 66.7
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 1.4e-21 105.9 70 68.6
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 1.8e-21 105.5 75 62.7
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 3.1e-21 104.8 70 68.6
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 6.8e-21 103.6 68 67.6
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 6.8e-21 103.6 75 58.7
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.2e-20 102.8 72 70.8
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.2e-20 102.8 72 70.8
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 2.6e-20 101.7 68 63.2
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.4e-20 101.3 67 68.7
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 4.4e-20 100.9 70 71.4
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 2.2e-19 98.6 66 62.1
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 2.9e-19 98.2 70 68.6
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 8.3e-19 96.7 89 55.1
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 3.2e-18 94.7 70 62.9
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 3.2e-18 94.7 70 62.9
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 1.0e-16 89.7 71 57.7
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 3.0e-16 88.2 70 58.6
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 3.0e-16 88.2 70 57.1
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 3.9e-16 87.8 55 70.9
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 3.9e-16 87.8 57 68.4
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 5.1e-16 87.4 104 45.2
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 5.1e-16 87.4 58 67.2
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 8.6e-16 86.7 71 56.3
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 8.6e-16 86.7 71 56.3
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 8.6e-16 86.7 70 57.1
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.5e-15 85.9 70 58.6
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 1.9e-15 85.5 72 52.8
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 2.5e-15 85.1 53 67.9
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 2.5e-15 85.1 71 52.1
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.6e-14 82.4 55 65.5
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 8.1e-14 80.1 51 66.7
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 2.4e-13 78.6 53 66.0
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 4.0e-13 77.8 65 55.4
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 2.6e-12 75.1 53 60.4
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 2.9e-11 71.6 65 50.8
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 1.1e-10 69.7 68 48.5
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 1.9e-10 68.9 59 47.5
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 2.5e-07 58.5 58 46.6


User provided reference genes

Program Settings