Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-124 449.9 223 100.0
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-124 449.9 223 100.0
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-104 380.6 223 83.4
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 7.2e-103 377.5 223 84.8
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 3.7e-99 365.2 223 83.4
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-97 359.4 221 82.4
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 5.9e-97 357.8 223 82.1
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-96 354.0 221 81.0
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 8.5e-96 354.0 221 81.0
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 1.5e-95 353.2 222 81.1
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 1.5e-95 353.2 222 81.1
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 2.0e-89 332.8 225 77.8
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 4.8e-83 311.6 223 71.3
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 8.5e-80 300.8 199 75.4
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 8.8e-77 290.8 221 70.1
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 2.6e-76 289.3 224 68.8
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 2.7e-73 279.3 224 67.4
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-68 263.8 207 68.6
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 2.6e-68 262.7 222 66.2
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 2.6e-68 262.7 222 66.2
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 3.4e-68 262.3 223 63.7
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 5.7e-68 261.5 223 65.9
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 4.9e-67 258.5 214 65.9
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 1.2e-65 253.8 212 63.7
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-60 237.3 224 54.9
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-60 236.9 223 59.2
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 8.3e-59 231.1 223 55.6
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 8.3e-59 231.1 223 55.6
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-58 230.3 221 54.8
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-57 226.9 226 57.5
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-57 226.5 226 57.1
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-56 223.8 223 54.3
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-56 223.8 223 54.3
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 5.0e-56 221.9 225 56.0
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 8.6e-56 221.1 225 56.9
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-55 219.9 225 56.0
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-55 219.5 225 54.7
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 2.5e-55 219.5 225 54.7
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 9.5e-55 217.6 222 57.7
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 1.4e-53 213.8 217 53.5
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 2.0e-52 209.9 228 55.3
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-52 209.1 217 53.0
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 3.4e-52 209.1 217 51.2
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 3.4e-52 209.1 217 53.0
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 3.4e-52 209.1 217 51.2
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 6.4e-51 204.9 223 51.6
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 9.2e-50 201.1 223 51.6
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 7.3e-47 191.4 221 52.9
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 7.3e-47 191.4 221 52.9
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 7.3e-47 191.4 221 52.9
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 2.1e-46 189.9 191 52.9
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-44 184.1 221 52.0
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 2.6e-44 183.0 220 51.8
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.2e-43 179.9 223 52.0
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.4e-42 176.4 217 47.0
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 9.2e-42 174.5 226 49.6
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 9.2e-42 174.5 226 49.6
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 1.6e-41 173.7 221 50.7
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 7.8e-41 171.4 221 49.8
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.0e-40 171.0 212 50.0
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 6.6e-40 168.3 217 48.8
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 6.6e-40 168.3 217 48.8
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 6.6e-40 168.3 217 48.8
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 5.6e-39 165.2 217 48.8
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 5.6e-39 165.2 217 48.8
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-38 163.7 171 53.2
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 6.2e-38 161.8 229 48.5
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 1.4e-34 150.6 162 53.1
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 7.1e-34 148.3 104 75.0
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 1.6e-33 147.1 207 48.8
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 1.6e-33 147.1 207 48.8
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 1.6e-33 147.1 207 48.8
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-31 140.2 231 43.3
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 4.3e-31 139.0 221 46.2
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 7.3e-31 138.3 231 43.3
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 7.3e-31 138.3 231 42.9
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 2.1e-30 136.7 231 42.9
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-29 132.9 240 42.1
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 6.9e-29 131.7 232 42.2
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-28 130.2 89 74.2
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-28 130.2 89 74.2
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 6.4e-27 125.2 226 41.2
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 8.4e-27 124.8 229 39.7
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-26 124.0 129 55.8
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-26 123.6 129 56.6
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 2.4e-26 123.2 221 42.5
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 5.1e-24 115.5 226 37.6
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 5.1e-24 115.5 226 37.6
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 6.7e-24 115.2 225 39.1
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 6.7e-24 115.2 225 39.1
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 1.1e-23 114.4 226 37.6
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 7.4e-23 111.7 231 40.3
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 3.6e-22 109.4 141 46.8
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 3.6e-22 109.4 141 46.8
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 3.6e-22 109.4 141 46.8
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.8e-21 107.1 162 44.4
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 5.3e-21 105.5 81 65.4
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 5.8e-20 102.1 209 38.3
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 2.9e-19 99.8 64 76.6
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 2.9e-19 99.8 64 76.6
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 6.4e-19 98.6 227 35.7
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.1e-18 97.8 227 36.6
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.2e-18 96.3 226 33.2
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 1.2e-17 94.4 129 45.7
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 2.1e-17 93.6 162 42.0
C06p46620 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-14 84.3 160 38.1
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 9.0e-13 78.2 195 32.8
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.0e-12 77.0 149 36.2
Lj2g0028248 Lotus japonicus HOM05D000535 ORTHO05D000427 1.2e-09 67.8 152 36.2
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 3.0e-08 63.2 161 36.0
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 8.7e-08 61.6 224 29.0
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 1.9e-07 60.5 136 32.4
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 4.3e-07 59.3 136 33.1
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 4.3e-07 59.3 161 34.8
Medtr6g059680 Medicago truncatula HOM05D000535 ORTHO05D000427 5.7e-07 58.9 161 32.9
arahy.Tifrunner.gnm1.ann1.9N9F55 Arachis hypogaea HOM05D000535 ORTHO05D000427 1.3e-06 57.8 143 36.4
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 1.3e-06 57.8 136 32.4
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 2.1e-06 57.0 156 32.7
arahy.Tifrunner.gnm1.ann1.U2UX9Q Arachis hypogaea HOM05D000535 ORTHO05D000427 2.8e-06 56.6 141 36.9
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 3.7e-06 56.2 136 32.4
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 3.7e-06 56.2 136 32.4
TPR.G5811 Trifolium pratense HOM05D000535 ORTHO05D000427 3.7e-06 56.2 161 29.8
Ca_25239_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 8.2e-06 55.1 161 31.7


User provided reference genes

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