Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 6.4e-51 203.8 101 100.0
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 7.9e-49 196.8 101 95.0
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 2.7e-33 145.2 73 93.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 2.7e-33 145.2 73 93.2
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 4.6e-33 144.4 73 93.2
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.3e-30 136.3 67 92.5
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.3e-30 136.3 67 92.5
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 6.3e-30 134.0 73 84.9
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 6.3e-30 134.0 73 84.9
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 8.2e-30 133.7 73 83.6
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 8.2e-30 133.7 73 83.6
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 1.1e-29 133.3 73 83.6
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.4e-29 132.9 73 83.6
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.4e-29 132.9 73 79.5
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 6.9e-29 130.6 73 82.2
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 6.9e-29 130.6 72 81.9
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 6.9e-29 130.6 72 81.9
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 6.9e-29 130.6 72 81.9
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 6.9e-29 130.6 72 81.9
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 6.9e-29 130.6 73 79.5
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 6.9e-29 130.6 73 79.5
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 6.9e-29 130.6 73 80.8
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 6.9e-29 130.6 73 79.5
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 9.0e-29 130.2 73 78.1
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 9.0e-29 130.2 73 79.5
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 1.2e-28 129.8 73 80.8
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.2e-28 129.8 73 78.1
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.2e-28 129.8 73 79.5
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.5e-28 129.4 73 78.1
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.5e-28 129.4 73 79.5
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.5e-28 129.4 73 79.5
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.0e-28 129.0 73 76.7
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.0e-28 129.0 73 78.1
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 2.0e-28 129.0 72 79.2
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.6e-28 128.6 73 78.1
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 2.6e-28 128.6 73 78.1
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 2.6e-28 128.6 73 78.1
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 3.4e-28 128.3 73 78.1
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 3.4e-28 128.3 73 78.1
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 3.4e-28 128.3 73 79.5
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 78.1
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 79.5
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 79.5
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 78.1
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.5e-28 127.9 72 79.2
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 78.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 4.5e-28 127.9 73 76.7
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 5.9e-28 127.5 73 78.1
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 5.9e-28 127.5 73 76.7
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 5.9e-28 127.5 73 76.7
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 7.7e-28 127.1 73 75.3
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 7.7e-28 127.1 73 79.5
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 7.7e-28 127.1 73 75.3
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 7.7e-28 127.1 73 76.7
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 7.7e-28 127.1 73 76.7
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 1.0e-27 126.7 73 76.7
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.0e-27 126.7 73 78.1
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.0e-27 126.7 73 76.7
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.0e-27 126.7 73 76.7
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 1.0e-27 126.7 73 79.5
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.3e-27 126.3 73 75.3
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 1.3e-27 126.3 73 75.3
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.7e-27 125.9 73 74.0
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.2e-27 125.6 73 76.7
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.9e-27 125.2 73 75.3
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.9e-27 125.2 73 75.3
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 2.9e-27 125.2 73 75.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 75.3
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 76.7
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 74.0
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 74.0
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 74.0
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 3.8e-27 124.8 73 76.7
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 5.0e-27 124.4 73 75.3
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 5.0e-27 124.4 73 78.1
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 5.0e-27 124.4 72 73.6
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 5.0e-27 124.4 72 73.6
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 5.0e-27 124.4 73 75.3
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 5.0e-27 124.4 73 74.0
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 5.0e-27 124.4 71 74.6
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 5.0e-27 124.4 73 74.0
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 6.5e-27 124.0 73 74.0
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 8.5e-27 123.6 73 75.3
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.1e-26 123.2 72 73.6
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.1e-26 123.2 73 74.0
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.4e-26 122.9 73 74.0
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.9e-26 122.5 74 74.3
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.2e-26 121.7 73 72.6
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.2e-26 121.7 69 73.9
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.2e-26 121.7 73 74.0
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 4.2e-26 121.3 74 74.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 4.2e-26 121.3 73 74.0
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 5.5e-26 120.9 74 74.3
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 5.5e-26 120.9 73 72.6
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 9.4e-26 120.2 73 74.0
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.2e-25 119.8 73 72.6
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.2e-25 119.8 73 69.9
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.2e-25 119.8 74 77.0
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 2.1e-25 119.0 69 73.9
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.1e-25 119.0 73 72.6
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.7e-25 118.6 73 68.5
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 2.7e-25 118.6 75 73.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 2.7e-25 118.6 73 72.6
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 3.6e-25 118.2 75 72.0
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 4.6e-25 117.9 75 72.0
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 4.6e-25 117.9 73 72.6
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 6.1e-25 117.5 74 71.6
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 3.9e-24 114.8 73 65.8
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 3.9e-24 114.8 118 46.6
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 8.8e-24 113.6 73 69.9
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 8.8e-24 113.6 73 68.5
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.3e-23 111.7 73 69.9
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 1.3e-22 109.8 70 65.7
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.8e-22 107.8 60 75.0
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.8e-22 107.8 73 64.4
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 3.1e-21 105.1 73 61.6
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.5e-20 102.8 73 60.3
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 2.6e-20 102.1 75 66.7
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.9e-18 95.9 76 57.9
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 3.2e-18 95.1 73 53.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 9.4e-18 93.6 112 43.8
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.0e-16 90.1 77 57.1
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 2.0e-15 85.9 59 67.8
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.1e-13 80.1 43 81.4
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.4e-13 79.7 43 81.4
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.4e-13 79.7 43 81.4
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.4e-13 79.7 43 81.4
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.2e-12 76.6 43 76.7
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 3.2e-10 68.6 43 67.4


User provided reference genes

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