Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14939 Brassica carinata HOM05D002269 ORTHO05D018664 2.1e-24 114.8 54 100.0
BcaB02g07593 Brassica carinata HOM05D002269 ORTHO05D002421 1.5e-14 82.0 37 100.0
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 4.1e-12 73.9 45 80.0
BcaB01g02645 Brassica carinata HOM05D002269 ORTHO05D018664 1.2e-11 72.4 47 74.5
BcaB01g00574 Brassica carinata HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
BcaB01g00575 Brassica carinata HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
BcaC07g39549 Brassica carinata HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
A09p43950 Brassica napus HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
C08p26050 Brassica napus HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
BolC8t50223H Brassica oleracea HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
BraA09t39852Z Brassica rapa HOM05D002269 ORTHO05D002421 5.9e-11 70.1 37 89.2
THA.LOC104826743 Tarenaya hassleriana HOM05D002269 ORTHO05D002421 1.7e-10 68.6 37 83.8
AT3G50845 Arabidopsis thaliana HOM05D002269 ORTHO05D002421 2.3e-10 68.2 37 86.5
BraA05t21020Z Brassica rapa HOM05D002269 ORTHO05D018664 2.3e-10 68.2 56 64.3
FvH4_1g13320 Fragaria vesca HOM05D002269 ORTHO05D002421 2.3e-10 68.2 40 75.0
CARHR160390 Cardamine hirsuta HOM05D002269 ORTHO05D002421 2.9e-10 67.8 35 85.7
Thhalv10010765m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 2.9e-10 67.8 37 83.8
AL5G31180 Arabidopsis lyrata HOM05D002269 ORTHO05D002421 3.9e-10 67.4 37 86.5
Oeu012599.1 Olea europaea HOM05D002269 ORTHO05D002421 6.6e-10 66.6 37 75.7
RcHm_v2.0_Chr2g0101601 Rosa chinensis HOM05D002269 ORTHO05D002421 1.1e-09 65.9 37 78.4
Solyc03g034050.3 Solanum lycopersicum HOM05D002269 ORTHO05D002421 1.1e-09 65.9 37 78.4
Sopen03g006820 Solanum pennellii HOM05D002269 ORTHO05D002421 1.1e-09 65.9 37 78.4
Manes.01G135300 Manihot esculenta HOM05D002269 ORTHO05D002421 1.5e-09 65.5 37 78.4
Manes.02G093600 Manihot esculenta HOM05D002269 ORTHO05D002421 1.5e-09 65.5 37 78.4
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.9e-09 65.1 37 81.1
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.9e-09 65.1 37 81.1
MD02G1148000 Malus domestica HOM05D002269 ORTHO05D002421 1.9e-09 65.1 37 78.4
Rhsim08G0117000 Rhododendron simsii HOM05D002269 ORTHO05D002421 2.5e-09 64.7 38 73.7
Actinidia19185 Actinidia chinensis HOM05D002269 ORTHO05D002421 3.3e-09 64.3 37 75.7
Gohir.A02G165100 Gossypium hirsutum HOM05D002269 ORTHO05D002421 3.3e-09 64.3 37 75.7
Gohir.D03G014900 Gossypium hirsutum HOM05D002269 ORTHO05D002421 3.3e-09 64.3 37 75.7
Gorai.003G015200 Gossypium raimondii HOM05D002269 ORTHO05D002421 3.3e-09 64.3 37 75.7
Duzib187G1657 Durio zibethinus HOM05D002269 ORTHO05D002421 4.3e-09 63.9 37 75.7
FAN23G0991 Fragaria x ananassa HOM05D002269 ORTHO05D002421 4.3e-09 63.9 37 75.7
FAN26G1254 Fragaria x ananassa HOM05D002269 ORTHO05D002421 4.3e-09 63.9 37 75.7
FAN28G2695 Fragaria x ananassa HOM05D002269 ORTHO05D002421 4.3e-09 63.9 37 75.7
SalBow1G4221 Salvia bowleyana HOM05D002269 ORTHO05D002421 4.3e-09 63.9 39 69.2
Atru.chr3.570 Acer truncatum HOM05D002269 ORTHO05D002421 5.6e-09 63.5 40 70.0
Carub.0005s1723 Capsella rubella HOM05D002269 ORTHO05D002421 5.6e-09 63.5 36 83.3
Sc03g0002960 Simmondsia chinensis HOM05D002269 ORTHO05D002421 5.6e-09 63.5 37 75.7
COL.COLO4_22083 Corchorus olitorius HOM05D002269 ORTHO05D002421 7.3e-09 63.2 37 73.0
Potri.005G123100 Populus trichocarpa HOM05D002269 ORTHO05D002421 7.3e-09 63.2 37 73.0
Prupe.7G154400 Prunus persica HOM05D002269 ORTHO05D002421 7.3e-09 63.2 37 75.7
QL06p046060 Quercus lobata HOM05D002269 ORTHO05D002421 7.3e-09 63.2 37 75.7
PGSC0003DMG400017791 Solanum tuberosum HOM05D002269 ORTHO05D002421 7.3e-09 63.2 37 75.7
EL10Ac6g15564 Beta vulgaris HOM05D002269 ORTHO05D002421 9.5e-09 62.8 37 73.0
C01p52910 Brassica napus HOM05D002269 ORTHO05D018664 9.5e-09 62.8 54 63.0
Lj4A201G47 Lonicera japonica HOM05D002269 ORTHO05D002421 9.5e-09 62.8 37 73.0
CSS0046028 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 73.0
Cc07_g09510 Coffea canephora HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 70.3
Dinv39985 Davidia involucrata HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 73.0
Hma1.2p1_0224F.1_g094670 Hydrangea macrophylla HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 73.0
Thecc.01G036100 Theobroma cacao HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 73.0
TWI73G0102 Tripterygium wilfordii HOM05D002269 ORTHO05D002421 1.2e-08 62.4 37 73.0
vmacro17833 Vaccinium macrocarpon HOM05D002269 ORTHO05D002421 1.6e-08 62.0 37 73.0
CiPaw.01G037800 Carya illinoinensis HOM05D002269 ORTHO05D002421 2.1e-08 61.6 37 73.0
FAN19G3136 Fragaria x ananassa HOM05D002269 ORTHO05D002421 2.1e-08 61.6 37 73.0
HanXRQChr14g0441191 Helianthus annuus HOM05D002269 ORTHO05D002421 2.1e-08 61.6 37 70.3
Peaxi162Scf00751g00316 Petunia axillaris HOM05D002269 ORTHO05D002421 2.1e-08 61.6 37 73.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.8e-08 61.2 37 78.4
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.8e-08 61.2 37 78.4
Eucgr.I02444 Eucalyptus grandis HOM05D002269 ORTHO05D002421 2.8e-08 61.2 37 70.3
Lj2g0019943 Lotus japonicus HOM05D002269 ORTHO05D002421 3.6e-08 60.8 37 75.7
Lalb_Chr16g0377841 Lupinus albus HOM05D002269 ORTHO05D002421 3.6e-08 60.8 37 75.7
Phvul.002G030201 Phaseolus vulgaris HOM05D002269 ORTHO05D002421 3.6e-08 60.8 37 75.7
VMungo1215G0252 Vigna mungo HOM05D002269 ORTHO05D002421 3.6e-08 60.8 37 75.7
Sp5g11370 Schrenkiella parvula HOM05D002269 ORTHO05D002421 4.7e-08 60.5 37 78.4
AUR62007564 Chenopodium quinoa HOM05D002269 ORTHO05D002421 6.1e-08 60.1 37 75.7
MBI16_g31003_MAGBIO Magnolia biondii HOM05D002269 ORTHO05D002421 6.1e-08 60.1 38 71.1
PGR119G1249 Punica granatum HOM05D002269 ORTHO05D002421 6.1e-08 60.1 37 67.6
arahy.Tifrunner.gnm1.ann1.BSFP8J Arachis hypogaea HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 75.7
arahy.Tifrunner.gnm1.ann1.HD9PWI Arachis hypogaea HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 75.7
AUR62004049 Chenopodium quinoa HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 75.7
Duzib147G0060 Durio zibethinus HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 70.3
ECA238G1153 Erigeron canadensis HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 67.6
Sabra05G0101200 Salix brachista HOM05D002269 ORTHO05D002421 8.0e-08 59.7 37 70.3
Glyma.11G068200 Glycine max HOM05D002269 ORTHO05D002421 1.0e-07 59.3 37 73.0
TAR628G1697 Trochodendron aralioides HOM05D002269 ORTHO05D002421 1.0e-07 59.3 37 70.3
Haze_15091 Corylus avellana HOM05D002269 ORTHO05D002421 1.4e-07 58.9 37 73.0
Glyma.01G175900 Glycine max HOM05D002269 ORTHO05D002421 1.4e-07 58.9 37 73.0
Sed0012954 Sechium edule HOM05D002269 ORTHO05D002421 1.4e-07 58.9 37 73.0
CANSAT01G1943 Cannabis sativa HOM05D002269 ORTHO05D002421 1.8e-07 58.5 37 73.0
AUR62036043 Chenopodium quinoa HOM05D000658 ORTHO05D000826 1.8e-07 58.5 46 63.0
Ca_24846_v3 Cicer arietinum L. HOM05D002269 ORTHO05D002421 1.8e-07 58.5 37 73.0
ClCG07G009210 Citrullus lanatus HOM05D002269 ORTHO05D002421 1.8e-07 58.5 37 73.0
MELO3C017563.2 Cucumis melo HOM05D002269 ORTHO05D002421 1.8e-07 58.5 37 73.0
MSTRG.23526 Avicennia marina HOM05D002269 ORTHO05D002421 2.3e-07 58.2 37 67.6
Nitab4.5_0003232g0040 Nicotiana tabacum HOM05D002269 ORTHO05D002421 4.0e-07 57.4 38 71.1
GSVIVG01018962001 Vitis vinifera HOM05D002269 ORTHO05D002421 4.0e-07 57.4 37 70.3
Aqoxy6G01106 Aquilegia oxysepala HOM05D002269 ORTHO05D002421 5.2e-07 57.0 37 70.3
Ciclev10027433m.g Citrus clementina HOM05D002269 ORTHO05D002421 5.2e-07 57.0 37 67.6
SGA_v2.0_scaffold489G52412 Striga asiatica HOM05D002269 ORTHO05D002421 6.8e-07 56.6 37 67.6
Migut.H00993 Erythranthe guttata HOM05D002269 ORTHO05D002421 8.9e-07 56.2 37 67.6
AUR62035653 Chenopodium quinoa HOM05D002269 ORTHO05D002421 1.5e-06 55.5 37 70.3
PSO731G0074 Papaver somniferum HOM05D002269 ORTHO05D002421 1.5e-06 55.5 38 65.8
Medtr5g020120 Medicago truncatula HOM05D002269 ORTHO05D002421 2.0e-06 55.1 37 67.6
ATR0733G085 Amborella trichopoda HOM05D002269 ORTHO05D002421 2.6e-06 54.7 37 67.6
CSS0004410 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 3.4e-06 54.3 35 68.6
CSS0015281 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 3.4e-06 54.3 35 68.6
CSS0022027 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 3.4e-06 54.3 35 68.6
Nitab4.5_0002897g0010 Nicotiana tabacum HOM05D002269 ORTHO05D002421 4.4e-06 53.9 35 68.6
Peaxi162Scf00052g00323 Petunia axillaris HOM05D002269 ORTHO05D002421 4.4e-06 53.9 35 68.6
TPR.G22284 Trifolium pratense HOM05D002269 ORTHO05D002421 4.4e-06 53.9 37 67.6
HPP92_001859 Vanilla planifolia HOM05D002269 ORTHO05D002421 4.4e-06 53.9 37 64.9
HPP92_001873 Vanilla planifolia HOM05D002269 ORTHO05D002421 4.4e-06 53.9 37 64.9
CSS0042614 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 9.8e-06 52.8 35 65.7
CAN.G874.29 Capsicum annuum HOM05D002269 ORTHO05D002421 9.8e-06 52.8 37 64.9
Lalb_Chr09g0325391 Lupinus albus HOM05D002269 ORTHO05D002421 9.8e-06 52.8 35 71.4
Nitab4.5_0006977g0020 Nicotiana tabacum HOM05D002269 ORTHO05D002421 9.8e-06 52.8 35 65.7
Psat2g159720 Pisum sativum HOM05D002269 ORTHO05D002421 9.8e-06 52.8 37 64.9
Sopen06g034450 Solanum pennellii HOM05D002269 ORTHO05D002421 9.8e-06 52.8 35 65.7
PGSC0003DMG402020115 Solanum tuberosum HOM05D002269 ORTHO05D002421 9.8e-06 52.8 35 65.7


User provided reference genes

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