Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 9.1e-187 656.8 330 100.0
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 5.9e-178 627.5 330 95.5
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.5e-176 622.9 331 95.5
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.8e-171 605.9 320 95.9
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 5.9e-170 600.9 320 94.7
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.0e-169 600.1 320 95.0
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 4.1e-163 578.2 330 87.6
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 4.5e-162 574.7 330 87.0
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 9.5e-160 567.0 330 86.4
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.1e-159 565.8 330 86.1
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 8.0e-159 563.9 330 85.8
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 6.8e-158 560.8 330 85.2
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 1.1e-147 526.9 329 80.2
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 1.4e-126 456.8 325 70.8
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 7.3e-112 407.9 298 65.1
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.2e-109 400.6 320 61.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 3.4e-109 399.1 308 64.6
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 7.6e-109 397.9 327 61.2
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 9.9e-109 397.5 282 67.4
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.3e-108 397.1 298 63.1
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 2.9e-108 396.0 330 61.8
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 3.8e-108 395.6 342 58.5
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 6.4e-108 394.8 308 63.6
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 6.4e-108 394.8 309 60.2
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 8.4e-108 394.4 326 59.8
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.2e-107 392.5 293 63.1
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 4.2e-107 392.1 313 61.0
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 9.3e-107 391.0 322 61.2
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 9.3e-107 391.0 333 59.2
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.2e-106 390.6 306 63.4
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 1.2e-106 390.6 326 60.7
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 3.5e-106 389.0 300 62.0
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 7.9e-106 387.9 331 60.1
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 1.8e-105 386.7 298 61.7
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 2.3e-105 386.3 338 59.2
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 6.7e-105 384.8 332 59.9
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 3.3e-104 382.5 322 58.4
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 3.3e-104 382.5 324 59.0
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 5.6e-104 381.7 327 57.2
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.3e-103 380.6 305 58.0
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 1.4e-102 377.1 317 56.5
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 2.4e-102 376.3 327 56.0
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 3.1e-102 375.9 321 57.9
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.0e-101 373.2 304 59.9
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 2.6e-101 372.9 300 60.7
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 2.2e-100 369.8 285 62.5
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 8.4e-100 367.9 316 57.9
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 8.4e-100 367.9 322 56.5
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 8.4e-100 367.9 326 56.1
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.1e-99 367.5 325 56.6
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 1.4e-99 367.1 314 57.0
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 5.5e-99 365.2 294 56.8
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 9.3e-99 364.4 307 59.0
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 1.6e-98 363.6 299 58.2
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 7.9e-98 361.3 319 55.2
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 2.3e-97 359.8 310 54.8
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.5e-96 356.3 294 56.5
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 4.8e-95 352.1 318 55.3
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.1e-94 350.9 322 53.4
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.5e-93 347.1 293 54.6
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 5.8e-93 345.1 285 59.3
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 5.0e-92 342.0 291 54.3
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.4e-91 340.5 269 60.6
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-91 340.5 270 60.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 5.5e-91 338.6 324 52.8
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 2.3e-89 333.2 293 58.4
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 2.5e-88 329.7 381 47.0
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.7e-87 325.9 246 63.0
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 8.2e-87 324.7 293 57.3
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 6.9e-86 321.6 290 51.4
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.0e-84 317.8 309 48.9
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.9e-83 313.5 319 48.0
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 7.2e-83 311.6 269 58.7
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 6.1e-82 308.5 309 53.4
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 6.7e-81 305.1 321 49.2
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 8.5e-76 288.1 327 48.3
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 1.3e-71 274.2 362 48.1
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 3.1e-70 269.6 328 41.8
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 3.1e-70 269.6 342 43.6
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 5.0e-68 262.3 211 59.2
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 3.2e-67 259.6 203 61.6
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 3.2e-67 259.6 211 59.7
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 2.7e-66 256.5 205 57.1
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 4.7e-66 255.8 270 52.2
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 7.4e-64 248.4 210 55.2
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.1e-62 244.6 209 56.0
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 3.5e-61 239.6 269 49.4
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 8.5e-60 235.0 241 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 9.1e-54 214.9 321 38.9
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.4e-49 201.1 170 59.4
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.5e-48 197.6 284 42.6
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 7.7e-45 185.3 288 38.9
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 1.3e-44 184.5 123 66.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 4.7e-42 176.0 318 35.8
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.8e-41 174.1 211 42.2
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 2.8e-34 150.2 99 69.7
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.0e-33 146.4 126 51.6
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 5.2e-33 146.0 295 30.8
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 3.7e-31 139.8 166 46.4
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 4.6e-29 132.9 110 59.1
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.3e-28 130.6 122 53.3
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 3.9e-28 129.8 117 56.4
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 3.9e-28 129.8 91 63.7
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 6.8e-25 119.0 80 62.5
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 5.8e-24 115.9 79 65.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 7.5e-24 115.5 155 36.8
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.4e-22 110.5 89 60.7
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.1e-22 109.0 89 59.6
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 2.1e-21 107.5 269 26.4
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.9e-19 100.9 178 37.6
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.8e-17 94.4 84 56.0
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 4.1e-14 83.2 59 62.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 8.1e-10 68.9 47 72.3
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 1.2e-08 65.1 142 33.1
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 1.1e-06 58.5 197 27.4
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-06 58.2 152 30.3
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.9e-06 57.8 152 30.3
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.9e-06 57.8 152 30.3
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 5.4e-06 56.2 39 66.7


User provided reference genes

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