Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 7.0e-256 886.7 427 100.0
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 3.3e-213 745.0 430 84.7
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 3.6e-204 714.9 433 81.1
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 2.4e-203 712.2 432 81.2
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 1.3e-201 706.4 433 80.8
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 7.1e-200 700.7 432 80.6
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 6.0e-199 697.6 417 82.0
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 6.0e-199 697.6 431 80.5
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 7.6e-194 680.6 426 79.1
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 1.5e-189 666.4 411 79.6
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.2e-183 646.7 413 78.0
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.3e-180 636.7 413 76.8
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 4.5e-178 628.2 413 75.3
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 1.0e-177 627.1 413 74.6
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 1.1e-173 613.6 407 74.9
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 8.5e-169 597.4 373 81.5
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 3.1e-163 578.9 426 68.8
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 1.7e-148 530.0 414 63.5
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 2.1e-127 459.9 311 74.3
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 1.7e-121 440.3 414 55.6
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 4.3e-120 435.6 411 57.7
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 4.7e-119 432.2 412 55.6
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 1.0e-118 431.0 423 54.8
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.3e-118 429.9 411 54.7
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 5.2e-118 428.7 415 55.2
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 2.6e-117 426.4 434 53.9
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 4.4e-117 425.6 414 55.1
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 5.8e-117 425.2 417 56.6
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 7.5e-117 424.9 408 54.9
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 1.7e-116 423.7 417 53.7
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 2.2e-116 423.3 413 54.5
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 6.4e-116 421.8 411 55.7
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 8.3e-116 421.4 407 53.8
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 1.9e-115 420.2 423 54.1
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.9e-115 420.2 419 54.4
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 2.4e-115 419.9 415 54.0
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 2.0e-114 416.8 416 54.6
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 2.7e-114 416.4 418 53.3
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 6.0e-114 415.2 411 54.0
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 7.8e-114 414.8 408 53.9
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 7.8e-114 414.8 422 54.0
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.0e-113 414.5 411 54.0
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 3.0e-113 412.9 420 52.9
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 5.0e-113 412.1 415 53.0
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 6.6e-113 411.8 414 52.7
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 8.6e-113 411.4 414 53.6
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.5e-112 410.6 410 53.7
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 4.3e-112 409.1 415 52.3
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 4.3e-112 409.1 433 52.2
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 9.5e-112 407.9 415 53.3
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 2.1e-111 406.8 413 55.0
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.2e-111 405.2 434 50.5
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 6.2e-111 405.2 418 54.1
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 1.4e-110 404.1 410 53.9
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.4e-110 404.1 415 52.5
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 2.3e-110 403.3 413 52.5
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 5.2e-110 402.1 420 51.9
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 4.4e-109 399.1 416 51.9
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 4.4e-109 399.1 422 51.7
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 5.8e-109 398.7 414 54.3
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 2.9e-108 396.4 405 52.8
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 6.4e-108 395.2 419 51.8
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.1e-107 394.4 416 53.6
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 1.3e-105 387.5 411 51.3
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.7e-105 387.1 412 51.9
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 6.6e-105 385.2 438 49.3
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 8.6e-105 384.8 405 52.1
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 8.6e-105 384.8 417 50.1
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 1.9e-104 383.6 415 53.3
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 4.3e-104 382.5 525 44.8
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 2.8e-103 379.8 403 51.1
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 4.7e-103 379.0 419 49.4
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 4.0e-102 375.9 415 49.9
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.0e-101 373.6 415 50.6
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 3.4e-101 372.9 405 51.9
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 4.4e-101 372.5 403 52.1
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 3.7e-100 369.4 406 50.5
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 1.9e-99 367.1 412 49.8
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 1.6e-98 364.0 414 48.1
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 7.8e-98 361.7 387 50.6
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 3.0e-97 359.8 354 55.6
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 3.0e-97 359.8 414 47.6
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 5.2e-94 349.0 341 54.5
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 2.6e-93 346.7 408 45.8
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.2e-92 343.6 356 52.0
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 3.8e-92 342.8 436 46.8
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 1.3e-89 334.3 332 55.4
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 3.0e-89 333.2 370 50.5
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 3.6e-87 326.2 420 47.9
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 4.8e-87 325.9 343 50.7
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 7.6e-85 318.5 400 47.2
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.2e-84 317.0 419 46.1
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 4.9e-84 315.8 427 43.3
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 9.6e-80 301.6 385 45.2
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.6e-79 300.8 507 40.0
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 2.4e-78 297.0 363 49.3
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.8e-73 280.8 325 47.7
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 2.8e-71 273.5 318 47.8
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 3.1e-70 270.0 305 49.2
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 4.0e-70 269.6 323 46.4
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.5e-67 260.4 438 40.4
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 6.7e-65 252.3 329 42.2
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 1.5e-64 251.1 192 70.8
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 7.4e-64 248.8 360 41.7
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 4.8e-63 246.1 311 45.7
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 6.1e-58 229.2 317 43.8
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 2.6e-53 213.8 169 61.5
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 1.0e-52 211.8 429 34.7
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 6.5e-52 209.1 394 36.0
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 6.5e-52 209.1 411 33.1
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 4.6e-50 203.0 266 44.0
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 7.9e-50 202.2 271 45.0
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 1.0e-49 201.8 326 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 5.1e-49 199.5 470 31.9
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 7.4e-48 195.7 251 46.2
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.7e-47 194.5 273 41.8
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 4.4e-32 143.3 69 88.4
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 4.4e-32 143.3 69 88.4
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 4.4e-32 143.3 74 86.5
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.7e-31 141.4 69 85.5
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.1e-30 138.7 221 42.1
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.4e-30 138.3 69 85.5
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 1.3e-28 131.7 364 28.8
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.5e-27 128.3 99 64.6
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.1e-26 124.4 238 37.0
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 2.0e-24 117.9 606 22.4
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 4.5e-21 106.7 122 50.8
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.8e-20 103.6 196 35.7
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 4.2e-19 100.1 51 84.3
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 3.6e-18 97.1 168 35.7
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 4.4e-16 90.1 451 24.4
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 1.4e-14 85.1 168 37.5
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 4.5e-13 80.1 73 50.7
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 5.7e-08 63.2 58 51.7
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.9e-07 60.8 170 34.7
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 6.3e-07 59.7 115 33.9


User provided reference genes

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