Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 5.6e-170 600.9 311 100.0
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 7.6e-151 537.3 311 88.4
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.6e-138 494.6 319 81.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.1e-130 470.3 303 81.5
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.9e-130 469.5 303 81.5
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.3e-123 446.0 312 76.0
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.1e-122 443.7 318 74.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.8e-120 436.4 317 73.5
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.5e-119 431.8 313 72.2
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.5e-117 426.0 311 73.6
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.0e-115 419.1 312 68.9
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 7.4e-114 414.5 313 67.7
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 6.3e-113 411.4 321 66.7
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.3e-112 408.3 314 66.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 4.5e-111 405.2 315 67.0
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 3.8e-110 402.1 312 66.7
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 5.0e-110 401.7 310 67.4
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.4e-109 400.2 273 80.6
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.6e-108 395.6 312 67.0
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.0e-107 392.5 312 65.1
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 6.7e-107 391.3 313 65.5
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.0e-106 389.8 312 65.4
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.3e-106 389.0 312 65.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.4e-101 373.6 313 62.6
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 2.1e-92 343.2 319 56.1
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.4e-91 340.5 312 59.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 5.2e-91 338.6 319 56.1
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 5.7e-90 335.1 253 68.0
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.4e-88 329.7 322 54.0
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 5.3e-88 328.6 320 53.8
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 7.0e-88 328.2 320 55.9
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.0e-88 328.2 317 53.9
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 9.1e-88 327.8 320 55.6
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.2e-87 327.4 320 55.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 3.5e-87 325.9 321 54.2
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.3e-86 323.9 311 54.7
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 3.8e-86 322.4 322 53.4
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 6.5e-86 321.6 312 56.4
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.5e-85 320.5 318 55.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.9e-85 320.1 320 53.4
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.5e-85 319.7 321 53.6
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.5e-85 319.7 320 53.8
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.2e-85 319.3 321 53.3
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.2e-85 318.9 311 53.1
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.2e-85 318.9 317 55.5
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.5e-85 318.5 312 56.1
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 7.2e-85 318.2 320 55.0
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.2e-84 317.4 314 54.8
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 4.7e-84 315.5 321 53.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 6.1e-84 315.1 310 52.6
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 8.0e-84 314.7 314 53.2
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.0e-84 314.7 314 53.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.0e-84 314.7 314 53.2
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.3e-83 313.2 316 52.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.0e-83 312.4 321 53.9
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 4.0e-83 312.4 320 52.5
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.0e-83 312.4 320 54.4
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 4.0e-83 312.4 318 53.1
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 5.2e-83 312.0 320 53.1
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 5.2e-83 312.0 324 50.3
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.8e-83 311.6 314 52.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.8e-83 311.6 314 52.5
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 2.0e-82 310.1 320 54.7
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 7.5e-82 308.1 320 52.8
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 3.7e-81 305.8 326 50.9
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.8e-81 305.4 314 51.6
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 4.8e-81 305.4 321 53.0
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.1e-80 304.3 322 49.7
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 4.1e-80 302.4 313 52.4
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.3e-80 302.0 297 55.9
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 5.3e-80 302.0 362 48.6
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 9.1e-80 301.2 317 53.6
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 9.1e-80 301.2 317 53.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 7.7e-79 298.1 318 51.9
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.9e-78 296.2 302 53.6
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 3.8e-78 295.8 321 50.2
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 3.8e-78 295.8 317 53.0
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.5e-77 293.9 307 52.8
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.6e-76 290.4 324 50.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.7e-76 289.7 297 53.9
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 4.7e-76 288.9 182 84.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 8.0e-76 288.1 303 52.1
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.0e-75 287.7 320 50.3
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 1.0e-75 287.7 320 49.1
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 1.8e-75 287.0 318 50.0
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.0e-75 285.8 272 55.1
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 4.0e-75 285.8 313 48.9
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 5.2e-75 285.4 314 51.9
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.5e-74 283.9 283 53.0
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 2.0e-74 283.5 320 50.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.6e-74 283.1 228 64.5
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 5.7e-74 282.0 298 51.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 7.5e-74 281.6 307 50.2
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.3e-73 280.8 333 48.9
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.7e-73 280.4 321 48.0
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.7e-73 279.3 315 49.2
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 6.3e-73 278.5 382 44.8
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.4e-72 276.6 317 47.3
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.0e-71 273.5 310 49.4
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 2.0e-71 273.5 328 46.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 2.3e-70 270.0 307 49.5
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 8.6e-70 268.1 303 49.8
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.1e-69 267.7 284 52.5
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.9e-69 266.9 305 47.2
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.9e-69 266.9 310 49.4
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 5.5e-69 265.4 300 49.7
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 7.2e-69 265.0 319 45.5
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.8e-67 260.4 273 52.7
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 5.7e-66 255.4 311 44.7
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 7.5e-66 255.0 304 46.1
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 9.8e-66 254.6 319 46.1
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.7e-65 253.8 294 46.9
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.7e-65 252.7 317 45.7
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.8e-64 250.4 301 47.8
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 5.0e-62 242.3 321 43.9
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 3.3e-61 239.6 324 43.2
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 4.3e-61 239.2 326 42.9
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.2e-58 231.1 325 42.5
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.2e-56 223.0 281 46.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 4.6e-55 219.2 240 48.8
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 6.2e-52 208.8 238 49.2
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.9e-48 197.2 306 38.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.5e-45 186.8 304 38.8
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 7.3e-45 185.3 241 45.6
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.4e-42 176.0 238 45.0
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 1.7e-41 174.1 297 36.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 3.1e-35 153.3 197 48.2
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.2e-34 151.4 82 90.2
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 7.6e-34 148.7 238 41.6
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 8.4e-33 145.2 326 29.8
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.3e-30 137.9 371 28.6
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.1e-29 134.8 239 36.8
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 2.5e-21 107.1 148 46.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.8e-20 102.8 225 31.6
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.7e-17 94.4 321 25.2
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 7.1e-16 89.0 82 54.9
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 8.1e-12 75.5 237 25.7
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 6.0e-07 59.3 74 43.2


User provided reference genes

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