Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 1.6e-81 306.6 230 100.0
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.3e-62 243.8 230 73.5
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 3.7e-62 242.3 228 71.5
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 3.7e-62 242.3 229 68.6
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 4.9e-62 241.9 230 75.7
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 2.4e-61 239.6 230 86.5
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-61 239.2 230 87.4
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 4.1e-61 238.8 228 69.7
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 7.0e-61 238.0 246 72.8
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 7.0e-61 238.0 226 88.1
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 7.0e-61 238.0 229 67.7
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.0e-60 236.5 228 70.2
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.7e-60 236.1 251 68.9
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 2.7e-60 236.1 226 88.1
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.0e-59 234.2 226 64.6
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.0e-59 234.2 228 68.4
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.3e-59 233.8 229 69.4
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.3e-59 233.8 228 78.5
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.7e-59 233.4 226 68.1
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 2.9e-59 232.6 228 74.1
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 5.0e-59 231.9 228 70.2
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 5.0e-59 231.9 226 62.4
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.1e-58 230.7 229 67.2
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.1e-58 230.7 229 55.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.5e-58 230.3 226 69.0
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.9e-58 229.9 227 74.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 2.5e-58 229.6 226 63.3
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 4.3e-58 228.8 229 66.8
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 4.3e-58 228.8 226 63.3
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.5e-58 227.6 229 72.1
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.2e-57 227.3 229 66.4
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.6e-57 226.9 226 61.1
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.1e-57 226.5 228 68.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 2.1e-57 226.5 228 59.2
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 4.7e-57 225.3 224 72.3
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.8e-56 223.4 227 73.1
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.8e-56 223.4 228 66.7
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 3.1e-56 222.6 228 76.3
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 225 69.8
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.2e-55 220.7 226 60.2
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 2.6e-55 219.5 228 61.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 5.8e-55 218.4 227 78.9
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 7.5e-55 218.0 227 67.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.5e-55 218.0 225 71.1
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.2e-54 216.5 228 64.5
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.2e-54 216.5 228 64.5
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 2.9e-54 216.1 230 69.6
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.9e-54 216.1 226 61.9
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 2.9e-54 216.1 228 57.9
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 2.9e-54 216.1 228 64.5
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 3.7e-54 215.7 224 64.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.9e-54 215.3 226 68.6
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.9e-54 215.3 226 69.9
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 6.4e-54 214.9 228 74.1
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 6.4e-54 214.9 226 73.0
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 6.4e-54 214.9 228 64.0
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 8.3e-54 214.5 233 59.7
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.1e-53 214.2 228 68.9
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 1.4e-53 213.8 230 77.8
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.9e-53 213.4 233 69.5
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 3.2e-53 212.6 230 68.3
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 4.1e-53 212.2 226 69.9
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 1.2e-52 210.7 228 77.2
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 1.2e-52 210.7 228 66.2
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.6e-52 210.3 222 68.9
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.6e-52 210.3 228 71.1
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 4.6e-52 208.8 224 68.3
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 1.0e-51 207.6 258 65.5
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.3e-51 207.2 231 68.8
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.3e-51 207.2 226 60.2
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.3e-51 207.2 228 73.2
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.3e-51 207.2 235 71.1
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 3.0e-51 206.1 228 70.6
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 3.9e-51 205.7 229 59.4
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 6.6e-51 204.9 228 68.9
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.5e-50 203.8 228 68.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.5e-50 203.0 228 65.8
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.3e-50 201.4 228 65.8
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 9.5e-50 201.1 228 57.9
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 9.5e-50 201.1 224 66.1
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 6.2e-49 198.4 227 64.8
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 2.3e-48 196.4 226 69.9
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.0e-48 195.7 228 61.4
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 5.2e-48 195.3 228 66.2
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 6.8e-48 194.9 228 70.2
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 3.7e-46 189.1 226 54.9
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 6.4e-46 188.3 228 67.5
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 8.3e-46 188.0 227 53.3
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.3e-46 188.0 143 79.0
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 8.3e-46 188.0 230 67.0
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 1.9e-45 186.8 143 83.9
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.4e-45 186.4 228 65.8
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.2e-45 186.0 228 65.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.1e-45 185.7 142 83.8
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 4.1e-45 185.7 228 57.9
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 5.4e-45 185.3 229 65.9
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.4e-45 185.3 140 85.0
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 9.2e-45 184.5 229 62.0
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.2e-44 184.1 140 84.3
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.2e-44 184.1 229 63.8
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.6e-44 182.2 228 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.3e-43 180.6 230 60.0
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 3.9e-43 179.1 228 71.9
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 6.6e-43 178.3 142 66.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 5.6e-42 175.3 229 56.3
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.2e-41 174.1 139 69.8
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.8e-41 172.9 223 46.6
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.7e-41 172.2 224 47.8
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-40 170.2 142 61.3
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 6.8e-40 168.3 229 45.0
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.5e-39 167.2 334 45.8
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.2e-37 159.5 228 50.0
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 9.2e-37 157.9 226 53.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 3.9e-35 152.5 229 62.4
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 5.1e-35 152.1 92 73.9
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 1.4e-32 144.1 211 62.6
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.7e-27 127.1 105 82.9
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.5e-26 124.0 64 84.4
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.6e-25 120.6 68 86.8
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.6e-25 120.6 188 55.3
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 9.0e-24 114.8 223 45.3
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.2e-23 114.4 90 61.1
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.4e-22 108.6 223 36.3
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 2.7e-20 103.2 94 54.3
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.3e-19 100.1 223 35.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.2e-15 87.8 119 44.5
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.5e-15 87.4 95 45.3
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 3.5e-12 76.3 40 92.5
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.9e-11 72.8 94 46.8
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 2.6e-07 60.1 79 43.0


User provided reference genes

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