Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.1e-111 405.6 218 100.0
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.8e-98 363.2 210 94.8
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.9e-98 362.1 208 95.2
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.6e-97 359.4 208 93.3
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.7e-96 356.7 210 93.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 2.6e-89 332.8 209 82.8
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.4e-87 327.0 205 82.9
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.7e-83 312.8 210 80.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.6e-81 306.2 206 77.2
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 9.7e-81 304.3 209 78.5
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.3e-80 303.9 208 76.4
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.3e-77 293.9 210 71.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.8e-74 283.5 207 71.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.0e-66 257.7 187 70.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-66 255.4 220 60.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 6.8e-66 255.0 210 61.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.8e-65 251.1 220 61.8
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 6.3e-64 248.4 196 63.8
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 6.3e-64 248.4 165 74.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.3e-64 248.4 170 69.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.3e-64 248.1 165 73.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 8.3e-64 248.1 169 71.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.1e-63 247.7 165 73.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-63 247.3 165 73.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.0e-63 245.0 170 70.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 9.2e-63 244.6 165 73.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 9.2e-63 244.6 165 73.3
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.6e-62 243.8 164 72.6
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.0e-62 243.4 165 71.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.0e-62 243.4 207 62.3
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.7e-62 243.0 172 70.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 3.5e-62 242.7 188 66.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.5e-62 242.7 165 70.3
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.5e-62 242.3 165 70.9
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 5.9e-62 241.9 165 70.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 7.8e-62 241.5 164 73.8
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.3e-61 240.7 165 70.9
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.7e-61 240.4 167 70.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.7e-61 240.4 185 67.6
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-61 240.4 165 70.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.9e-61 239.6 203 61.1
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.8e-61 239.2 212 60.4
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 5.0e-61 238.8 162 71.0
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 8.6e-61 238.0 165 70.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-60 237.7 196 61.2
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.1e-60 237.7 165 71.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.1e-60 237.7 165 71.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.9e-60 236.9 169 67.5
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.5e-60 236.5 165 70.3
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.3e-60 235.7 165 69.7
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 5.6e-60 235.3 168 67.9
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.3e-60 235.0 162 72.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 9.5e-60 234.6 169 67.5
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 9.5e-60 234.6 165 70.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 9.5e-60 234.6 200 56.0
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.6e-59 233.8 164 70.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.6e-59 233.8 165 69.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 2.8e-59 233.0 169 65.7
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.8e-59 233.0 170 65.3
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.7e-59 232.3 165 69.1
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.7e-59 232.3 165 69.1
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 8.0e-59 231.5 197 63.5
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.0e-59 231.5 165 68.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.0e-58 231.1 165 67.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.4e-58 230.7 165 69.1
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.8e-58 230.3 165 69.7
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.0e-58 229.2 208 56.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.0e-58 229.2 162 69.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 8.9e-58 228.0 202 55.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.2e-57 227.6 191 59.2
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.0e-57 226.9 165 66.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 7.5e-57 224.9 159 69.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.9e-56 223.0 165 64.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.9e-56 222.2 165 64.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 6.4e-56 221.9 164 67.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 8.3e-56 221.5 167 65.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 8.3e-56 221.5 165 64.8
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-55 221.1 163 66.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.4e-55 220.7 165 66.7
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.8e-55 220.3 165 66.1
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.4e-55 219.9 165 64.2
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 7.0e-55 218.4 195 57.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.6e-54 217.2 170 62.9
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.7e-54 216.5 165 65.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 4.6e-54 215.7 185 56.8
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.3e-53 214.2 158 66.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.9e-53 212.6 162 66.7
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 6.6e-53 211.8 164 61.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 6.6e-53 211.8 169 63.3
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.3e-52 209.5 168 63.7
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.6e-51 207.2 168 58.9
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.4e-50 204.1 170 58.8
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.4e-50 204.1 167 59.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 6.8e-50 201.8 174 59.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.4e-47 193.4 164 57.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.4e-47 192.2 170 57.1
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 7.0e-47 191.8 165 60.0
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 9.2e-47 191.4 170 57.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.8e-46 188.3 165 55.2
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-44 184.5 165 53.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.3e-44 182.6 165 53.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.3e-44 182.6 167 55.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 6.2e-43 178.7 221 45.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.3e-42 176.8 163 56.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 8.9e-42 174.9 165 52.7
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 8.9e-42 174.9 164 53.7
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 7.5e-41 171.8 125 68.8
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.3e-40 168.3 116 67.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-39 167.2 165 49.7
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 3.2e-39 166.4 130 63.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 7.1e-39 165.2 123 67.5
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 9.2e-39 164.9 196 47.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.1e-38 163.7 161 55.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.0e-37 161.4 170 50.0
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.5e-36 157.5 137 58.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.9e-36 157.1 164 50.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 6.2e-35 152.1 127 62.2
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-34 150.2 165 46.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-30 137.9 175 45.7
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-29 134.4 175 45.1
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-28 131.0 174 44.8
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.0e-25 120.6 99 57.6
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 7.1e-23 112.1 172 37.8
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 6.0e-22 109.0 84 56.0
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 7.8e-22 108.6 106 50.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.3e-19 101.3 73 64.4
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.6e-19 99.8 73 61.6
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 4.0e-18 96.3 123 45.5
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-17 94.7 81 54.3
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.0e-17 94.0 84 58.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 4.5e-09 66.2 56 58.9
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.9e-09 65.1 44 63.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 3.8e-08 63.2 42 61.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.8e-08 63.2 42 61.9
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.9e-08 62.8 41 63.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-06 57.8 55 54.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 4.6e-06 56.2 55 52.7


User provided reference genes

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