Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-91 339.3 179 100.0
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-77 292.4 181 86.7
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-77 292.4 181 86.7
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-74 282.7 181 86.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-74 281.6 181 85.6
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 3.6e-73 278.5 182 85.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.1e-65 250.8 183 77.0
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-63 246.5 181 74.0
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-62 242.7 182 73.1
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.1e-60 236.1 182 71.4
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.1e-60 236.1 182 71.4
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.6e-60 235.0 181 74.0
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.0e-60 234.6 182 70.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.0e-60 234.6 182 70.9
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-59 232.6 181 72.9
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-59 232.6 181 72.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-56 223.8 181 72.4
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 6.9e-56 221.1 181 71.8
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 6.9e-56 221.1 181 71.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.5e-50 203.4 181 65.2
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-46 189.5 161 70.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.8e-46 188.7 185 63.2
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 3.4e-39 165.6 132 69.7
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.5e-39 165.2 183 58.5
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.0e-35 154.1 122 69.7
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.3e-34 149.1 184 54.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.4e-34 148.7 186 53.2
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 7.4e-34 147.9 186 52.7
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 7.4e-34 147.9 186 52.7
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 7.4e-34 147.9 186 52.7
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 3.7e-33 145.6 181 49.7
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 3.7e-33 145.6 181 49.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 4.8e-33 145.2 181 51.9
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.3e-32 141.7 179 54.2
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-29 133.3 183 47.0
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.9e-29 133.3 183 47.0
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.2e-29 132.5 130 56.9
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.2e-29 132.5 196 45.9
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-28 130.6 183 46.4
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.2e-28 130.6 183 46.4
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-28 130.2 144 54.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 3.6e-28 129.0 82 80.5
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.3e-27 126.3 202 43.6
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 3.1e-24 115.9 181 43.6
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.2e-23 114.0 179 44.7
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 3.2e-21 105.9 200 42.5
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 5.5e-21 105.1 146 52.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 2.1e-20 103.2 191 42.9
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 2.7e-20 102.8 200 42.0
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.1e-20 101.7 191 42.9
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.1e-20 101.7 196 42.9
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.0e-19 99.4 195 41.0
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.0e-19 99.4 195 41.0
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.0e-19 99.4 187 42.2
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.0e-19 99.0 204 40.2
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 5.2e-19 98.6 206 42.7
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.2e-19 98.6 219 40.2
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 8.8e-19 97.8 186 40.3
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 8.8e-19 97.8 203 43.3
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.5e-18 97.1 121 49.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.5e-18 97.1 199 40.7
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.6e-18 96.3 189 41.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 3.4e-18 95.9 173 42.8
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.4e-18 95.9 200 41.5
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 5.7e-18 95.1 141 48.2
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 7.5e-18 94.7 182 40.7
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.5e-18 94.7 172 43.6
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.7e-17 93.6 199 41.7
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.2e-17 93.2 197 40.6
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 2.2e-17 93.2 181 42.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.2e-17 93.2 174 39.7
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.8e-17 92.8 205 39.5
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.8e-17 92.0 182 40.7
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.3e-17 91.7 197 40.1
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.4e-16 90.5 180 41.1
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.4e-16 90.5 193 37.3
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 3.1e-16 89.4 190 37.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.1e-16 89.0 177 40.1
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 9.1e-16 87.8 172 41.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.2e-15 87.4 188 38.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.6e-15 87.0 143 44.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.6e-15 87.0 185 39.5
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.6e-15 87.0 159 40.9
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 2.0e-15 86.7 200 41.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 187 36.4
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.5e-15 85.9 193 37.8
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.5e-15 85.9 188 38.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.5e-15 85.9 188 39.9
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 5.9e-15 85.1 187 40.1
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 7.7e-15 84.7 198 38.9
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.0e-14 84.3 190 39.5
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.0e-14 84.3 177 38.4
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.0e-14 84.3 177 38.4
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.3e-14 84.0 121 41.3
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.7e-14 83.6 196 38.8
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.2e-14 83.2 132 45.5
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.8e-14 82.4 193 36.8
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 5.0e-14 82.0 212 39.2
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 5.0e-14 82.0 160 38.8
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 5.0e-14 82.0 187 36.9
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 8.5e-14 81.3 185 36.8
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 8.5e-14 81.3 180 41.1
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.1e-13 80.9 178 38.2
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.1e-13 80.9 190 42.6
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.5e-13 80.5 185 38.4
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.9e-13 80.1 188 39.9
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.5e-13 79.7 184 36.4
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 2.5e-13 79.7 186 40.3
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.2e-13 79.0 186 36.0
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.2e-13 79.0 184 38.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.2e-13 78.2 72 61.1
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 7.2e-13 78.2 179 35.8
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.4e-13 77.8 179 39.1
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-12 77.4 191 34.0
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.2e-12 77.4 182 37.9
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-12 77.0 179 39.1
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 175 37.7
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 6.1e-12 75.1 74 52.7
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 6.1e-12 75.1 173 35.3
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.0e-11 74.3 199 37.7
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-11 73.9 204 37.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.8e-11 73.6 120 43.3
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.8e-11 73.6 75 53.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.0e-11 72.8 179 36.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.0e-11 72.8 193 38.3
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 3.0e-11 72.8 176 33.5
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 5.2e-11 72.0 132 40.9
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 8.8e-11 71.2 183 38.3
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 8.8e-11 71.2 189 36.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 8.8e-11 71.2 172 42.4
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 2.0e-10 70.1 94 51.1
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 2.6e-10 69.7 171 35.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 3.4e-10 69.3 195 35.4
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 4.4e-10 68.9 169 36.1
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.3e-09 67.4 194 35.1
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.2e-09 66.6 207 34.3
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 7.0e-08 61.6 176 32.4
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.1e-08 61.2 184 33.7
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.2e-07 60.8 144 34.0
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 2.0e-07 60.1 76 48.7
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.6e-06 55.1 175 31.4


User provided reference genes

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