Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.3e-54 216.1 104 100.0
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 1.1e-48 196.4 104 87.5
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 1.1e-48 196.4 104 87.5
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 6.9e-48 193.7 104 86.5
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.0e-47 192.2 104 86.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 4.9e-46 187.6 95 91.6
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 7.1e-37 157.1 105 71.4
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 1.6e-36 156.0 105 70.5
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.6e-36 156.0 102 68.6
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 2.7e-36 155.2 104 69.2
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 2.7e-36 155.2 105 70.5
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 2.7e-36 155.2 105 70.5
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.3e-35 152.9 104 68.3
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.5e-34 148.7 93 71.0
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 4.8e-33 144.4 79 83.5
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 1.4e-29 132.9 93 64.5
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 2.5e-29 132.1 94 62.8
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 4.2e-29 131.3 97 57.7
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 7.1e-29 130.6 101 57.4
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 7.1e-29 130.6 101 55.4
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 1.2e-28 129.8 104 56.7
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 4.6e-28 127.9 88 69.3
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 4.6e-28 127.9 102 54.9
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 7.9e-28 127.1 103 54.4
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 7.9e-28 127.1 94 55.3
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 1.0e-27 126.7 93 55.9
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 1.0e-27 126.7 93 55.9
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.3e-27 126.3 93 60.2
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.3e-27 126.3 101 52.5
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.3e-27 126.3 94 55.3
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 2.3e-27 125.6 94 55.3
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 2.3e-27 125.6 94 55.3
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 3.9e-27 124.8 96 57.3
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 3.9e-27 124.8 78 75.6
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 5.1e-27 124.4 93 57.0
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 5.1e-27 124.4 104 53.8
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 5.1e-27 124.4 100 56.0
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 6.7e-27 124.0 93 58.1
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 8.7e-27 123.6 102 53.9
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 8.7e-27 123.6 93 58.1
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 1.1e-26 123.2 93 58.1
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 1.1e-26 123.2 94 54.3
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.1e-26 123.2 93 59.1
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 1.5e-26 122.9 100 55.0
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 1.9e-26 122.5 93 54.8
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.9e-26 122.5 94 55.3
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.9e-26 122.5 94 59.6
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.9e-26 122.5 91 56.0
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 1.9e-26 122.5 93 54.8
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 2.5e-26 122.1 101 52.5
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 2.5e-26 122.1 94 55.3
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 2.5e-26 122.1 93 55.9
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.3e-26 121.7 94 58.5
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.3e-26 121.7 93 58.1
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 3.3e-26 121.7 93 58.1
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 4.3e-26 121.3 101 55.4
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 4.3e-26 121.3 103 51.5
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 4.3e-26 121.3 93 59.1
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 7.4e-26 120.6 103 52.4
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 7.4e-26 120.6 94 54.3
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 9.6e-26 120.2 97 51.5
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 1.6e-25 119.4 93 57.0
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 1.6e-25 119.4 95 56.8
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.6e-25 119.4 101 55.4
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.8e-25 117.9 84 59.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.8e-25 117.9 100 52.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.2e-25 117.1 85 60.0
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 1.1e-24 116.7 100 55.0
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.1e-24 116.7 93 54.8
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.1e-24 116.7 94 54.3
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 2.4e-24 115.5 94 51.1
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.4e-24 115.5 94 53.2
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 5.3e-24 114.4 75 61.3
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 5.3e-24 114.4 75 62.7
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 6.9e-24 114.0 75 62.7
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 6.9e-24 114.0 75 61.3
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 6.9e-24 114.0 75 61.3
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 6.9e-24 114.0 91 56.0
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 9.0e-24 113.6 102 48.0
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 9.0e-24 113.6 75 62.7
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 9.0e-24 113.6 75 61.3
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-23 113.2 75 60.0
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.2e-23 113.2 75 60.0
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.2e-23 113.2 75 60.0
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 1.2e-23 113.2 93 52.7
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.2e-23 113.2 91 54.9
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.5e-23 112.8 91 50.5
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 2.0e-23 112.5 100 50.0
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 2.6e-23 112.1 99 50.5
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 2.6e-23 112.1 75 60.0
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 2.6e-23 112.1 75 60.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 2.6e-23 112.1 75 60.0
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 2.6e-23 112.1 75 60.0
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 2.6e-23 112.1 75 60.0
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 2.6e-23 112.1 94 50.0
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 4.5e-23 111.3 76 61.8
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 61.3
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 58.7
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 61.3
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 61.3
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 58.7
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 5.8e-23 110.9 75 58.7
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 1.3e-22 109.8 91 52.7
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.3e-22 109.8 91 52.7
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 2.9e-22 108.6 85 54.1
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 5.0e-22 107.8 84 52.4
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 3.2e-21 105.1 82 54.9
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 7.2e-21 104.0 91 50.5
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.2e-20 103.2 99 46.5
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 4.6e-20 101.3 91 48.4
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 4.3e-18 94.7 74 52.7
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.8e-17 91.3 95 46.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.8e-17 91.3 95 46.3
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 8.2e-17 90.5 92 42.4
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 3.1e-16 88.6 74 48.6
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 6.9e-16 87.4 92 40.2
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.0e-15 85.9 73 52.1
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.6e-15 85.5 57 61.4
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.4e-13 79.7 92 34.8
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 1.1e-10 70.1 69 43.5
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 6.9e-08 60.8 104 32.7
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 4.5e-07 58.2 103 31.1
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 7.7e-07 57.4 70 38.6
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.7e-06 56.2 69 36.2
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 103 31.1
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 2.9e-06 55.5 69 36.2
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 6.5e-06 54.3 69 36.2
CANSAT25G3026 Cannabis sativa HOM05D000489 ORTHO05D000372 8.5e-06 53.9 107 30.8


User provided reference genes

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