Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 5.4e-81 304.3 155 100.0
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 5.4e-73 277.7 155 89.7
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 5.4e-73 277.7 155 89.7
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 2.3e-71 272.3 158 88.0
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 5.0e-71 271.2 162 86.4
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 6.6e-71 270.8 165 84.2
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 1.5e-70 269.6 158 87.3
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 4.7e-69 264.6 160 83.8
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 4.7e-69 264.6 161 84.5
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.1e-68 263.5 160 83.1
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.1e-68 263.5 160 83.1
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 1.8e-68 262.7 164 81.1
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.6e-64 249.6 163 77.3
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 1.3e-63 246.5 167 75.4
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 6.4e-58 227.6 159 72.3
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.4e-57 225.7 153 72.5
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 5.4e-57 224.6 159 73.0
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 7.1e-57 224.2 153 71.9
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.6e-56 223.0 156 71.2
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 3.5e-56 221.9 159 72.3
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 3.5e-56 221.9 155 72.9
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 6.0e-56 221.1 159 71.1
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.0e-55 220.3 157 70.7
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-55 219.5 157 70.7
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 1.7e-55 219.5 160 70.0
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.7e-55 219.5 162 70.4
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 155 71.6
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.0e-55 218.8 159 69.8
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 3.9e-55 218.4 152 71.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.1e-55 218.0 163 72.4
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 5.1e-55 218.0 156 71.8
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.6e-55 217.6 155 71.6
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 1.5e-54 216.5 162 68.5
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 2.5e-54 215.7 151 69.5
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 3.3e-54 215.3 160 66.9
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 3.3e-54 215.3 155 72.3
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 4.3e-54 214.9 160 70.0
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.3e-54 214.9 160 70.0
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 7.3e-54 214.2 153 68.0
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 7.3e-54 214.2 157 68.2
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.2e-53 213.4 155 69.0
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-53 212.6 157 70.1
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.2e-53 211.1 157 67.5
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.2e-53 211.1 155 72.9
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 8.1e-53 210.7 154 69.5
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 8.1e-53 210.7 161 67.1
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 8.1e-53 210.7 161 67.1
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 8.1e-53 210.7 152 67.8
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.1e-52 210.3 159 69.2
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 1.1e-52 210.3 159 66.7
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 1.4e-52 209.9 155 65.2
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.4e-52 209.1 159 66.0
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.4e-52 209.1 159 66.0
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.4e-52 209.1 156 72.4
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 5.2e-52 208.0 152 67.8
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 5.2e-52 208.0 159 65.4
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 5.2e-52 208.0 156 68.6
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 5.2e-52 208.0 150 70.0
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 6.8e-52 207.6 163 69.3
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 1.5e-51 206.5 156 69.2
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 2.0e-51 206.1 156 68.6
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 3.4e-51 205.3 151 68.9
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.4e-51 205.3 155 66.5
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 3.4e-51 205.3 153 69.3
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 4.4e-51 204.9 159 66.0
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 4.4e-51 204.9 162 66.7
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 4.4e-51 204.9 153 65.4
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 4.4e-51 204.9 121 81.0
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 4.4e-51 204.9 121 81.0
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 5.8e-51 204.5 151 67.5
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 7.6e-51 204.1 154 69.5
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 9.9e-51 203.8 156 67.9
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 1.7e-50 203.0 160 66.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.7e-50 203.0 121 79.3
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 3.8e-50 201.8 156 66.7
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 1.1e-49 200.3 162 64.2
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 1.4e-49 199.9 159 61.6
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.4e-49 199.9 157 66.2
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 3.2e-49 198.7 156 64.1
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 4.2e-49 198.4 133 71.4
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 4.2e-49 198.4 156 64.1
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 4.2e-49 198.4 158 63.9
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 5.4e-49 198.0 156 62.8
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 5.4e-49 198.0 149 66.4
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 7.1e-49 197.6 155 65.8
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 9.2e-49 197.2 152 66.4
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 9.2e-49 197.2 156 64.7
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 1.6e-48 196.4 162 63.0
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 7.8e-48 194.1 161 62.7
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 1.0e-47 193.7 161 62.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 1.0e-47 193.7 137 70.8
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 2.3e-47 192.6 156 62.8
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.3e-47 192.6 150 63.3
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 2.3e-47 192.6 146 67.1
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 3.9e-47 191.8 164 60.4
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 3.9e-47 191.8 150 63.3
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 3.9e-47 191.8 140 65.7
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.1e-46 190.3 158 62.0
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.9e-46 189.5 155 62.6
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.9e-46 189.5 129 71.3
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 3.3e-46 188.7 149 63.1
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.6e-45 186.4 159 63.5
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 3.6e-45 185.3 152 63.2
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 4.8e-45 184.9 135 67.4
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 8.1e-45 184.1 118 71.2
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 1.5e-43 179.9 141 64.5
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 3.2e-41 172.2 136 65.4
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 9.3e-41 170.6 106 84.9
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.1e-38 163.7 138 62.3
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 9.6e-38 160.6 144 59.0
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 4.0e-36 155.2 91 80.2
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 7.9e-32 141.0 146 49.3
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 6.7e-31 137.9 132 51.5
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 1.4e-28 130.2 90 73.3
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 1.4e-28 130.2 85 68.2
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 6.9e-28 127.9 90 72.2
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.0e-26 124.0 82 70.7
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 9.3e-25 117.5 128 46.1
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 3.5e-16 89.0 80 58.8
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 6.1e-16 88.2 49 83.7
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.3e-15 87.0 49 85.7
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 1.6e-13 80.1 149 33.6
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 9.0e-12 74.3 131 33.6
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 2.6e-11 72.8 168 38.1
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.0e-07 60.8 133 30.8


User provided reference genes

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