Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 4.0e-136 488.4 311 100.0
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 4.8e-113 411.8 312 84.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 6.9e-112 407.9 309 83.8
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 6.9e-112 407.9 319 85.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.7e-105 385.6 308 81.2
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 8.2e-105 384.4 307 81.1
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.1e-104 384.0 318 86.5
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 4.5e-103 378.6 311 81.0
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 4.2e-101 372.1 315 79.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 4.7e-100 368.6 308 82.1
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.3e-99 366.3 310 76.8
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.0e-98 363.2 309 77.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.8e-96 356.7 316 75.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 7.7e-95 351.3 311 76.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.8e-91 340.1 308 77.9
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.0e-83 312.8 311 69.1
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.6e-82 309.7 299 72.6
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 7.5e-82 308.1 310 66.8
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.5e-77 293.1 311 64.6
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.5e-77 292.0 307 64.8
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.6e-76 290.4 307 64.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.8e-75 284.6 306 62.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.2e-74 284.3 311 64.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.0e-74 283.5 306 62.4
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.2e-73 280.0 306 62.4
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.4e-72 277.3 306 67.3
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 7.0e-72 275.0 306 68.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.0e-71 273.5 312 63.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.5e-71 272.7 308 63.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 5.0e-70 268.9 309 60.2
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.1e-69 267.7 310 61.9
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.5e-69 266.5 304 61.2
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 3.3e-69 266.2 308 60.7
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.3e-69 266.2 308 65.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 9.5e-69 264.6 303 60.4
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 9.5e-69 264.6 305 61.6
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.6e-68 263.8 316 60.4
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-68 262.7 306 57.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-68 262.7 306 57.8
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.0e-67 261.2 313 60.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.8e-67 260.4 310 64.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.8e-67 260.4 310 61.0
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 4.0e-67 259.2 307 64.2
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 5.2e-67 258.8 310 62.3
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 8.9e-67 258.1 311 65.3
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.2e-66 257.7 320 55.6
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.5e-66 257.3 304 59.5
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.0e-66 256.9 308 61.4
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-66 256.5 315 58.4
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.4e-66 256.1 309 57.6
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 3.4e-66 256.1 310 62.6
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.8e-65 253.1 330 58.2
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.8e-65 253.1 306 61.8
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 6.3e-65 251.9 320 59.4
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.1e-64 251.1 312 64.4
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.1e-64 251.1 329 57.8
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-64 251.1 304 63.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-64 251.1 304 63.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-64 250.4 310 59.4
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.8e-64 250.4 310 59.0
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.4e-64 250.0 308 63.6
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-64 250.0 316 56.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 3.2e-64 249.6 308 64.0
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.2e-64 249.6 309 59.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 4.1e-64 249.2 319 54.5
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.1e-64 249.2 308 63.6
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 7.0e-64 248.4 308 62.3
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 7.0e-64 248.4 308 60.7
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 9.2e-64 248.1 308 65.9
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 2.0e-63 246.9 306 57.2
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.0e-63 246.9 317 55.5
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.5e-63 246.1 326 61.7
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 5.9e-63 245.4 318 57.5
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 5.9e-63 245.4 300 52.7
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.9e-63 245.4 320 58.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.9e-63 245.4 327 61.5
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 5.9e-63 245.4 305 57.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.0e-62 244.6 291 59.1
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.3e-62 244.2 308 61.0
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.7e-62 243.8 310 55.8
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.3e-62 243.4 308 58.8
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.9e-62 243.0 313 62.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.1e-61 241.1 306 62.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.5e-61 240.7 304 58.6
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-61 240.7 297 60.6
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.9e-61 240.4 315 63.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.3e-61 239.6 309 64.4
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.3e-61 239.2 311 59.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 5.6e-61 238.8 328 61.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 2.8e-60 236.5 317 61.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.6e-60 236.1 310 62.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.6e-60 236.1 316 59.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.6e-60 236.1 303 65.3
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 4.7e-60 235.7 319 51.4
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 8.0e-60 235.0 311 60.8
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 8.0e-60 235.0 313 56.2
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 3.1e-59 233.0 252 67.5
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.2e-59 232.3 311 59.8
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 5.2e-59 232.3 311 60.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 6.8e-59 231.9 311 60.1
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.8e-59 231.9 317 58.0
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.9e-59 231.5 309 58.6
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.0e-58 230.3 310 61.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.6e-58 229.9 318 57.2
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.8e-58 228.8 310 58.7
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 7.5e-58 228.4 314 62.4
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.8e-58 228.0 302 60.9
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.3e-57 227.6 322 60.6
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.3e-57 227.6 312 55.4
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.2e-57 226.9 309 57.0
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.2e-57 226.9 308 53.9
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.2e-57 226.9 308 53.9
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.7e-57 226.1 307 60.3
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 6.4e-57 225.3 322 60.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 8.3e-57 224.9 328 57.9
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.1e-56 224.6 137 83.9
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.4e-56 224.2 323 57.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.4e-56 224.2 307 58.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.2e-55 221.1 320 50.9
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.6e-55 220.7 320 49.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.5e-55 219.5 306 58.5
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 4.6e-55 219.2 311 57.2
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 3.0e-54 216.5 352 52.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 8.6e-54 214.9 333 57.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.6e-52 210.7 315 60.0
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 3.6e-52 209.5 306 54.2
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-51 206.8 279 54.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 3.1e-51 206.5 286 58.7
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.2e-49 200.3 302 56.0
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.7e-49 199.5 307 53.4
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.4e-49 198.7 137 72.3
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 8.3e-49 198.4 415 44.1
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-48 197.6 308 49.0
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.4e-48 196.8 313 53.4
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.5e-47 193.0 317 51.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 3.9e-46 189.5 318 57.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.1e-45 188.0 309 48.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.5e-45 187.6 133 69.9
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 6.2e-44 182.2 313 47.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 3.1e-43 179.9 234 57.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.8e-42 175.6 134 70.1
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 9.9e-42 174.9 133 65.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.9e-41 173.3 303 52.5
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.7e-41 172.9 134 68.7
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 7.1e-40 168.7 207 76.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 5.1e-38 162.5 308 45.8
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-37 161.0 315 45.4
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.5e-37 160.2 328 44.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 6.2e-36 155.6 106 73.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.4e-35 154.5 239 63.2
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 5.2e-35 152.5 295 45.4
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 2.9e-33 146.7 308 46.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.5e-31 139.8 77 90.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 3.3e-29 133.3 319 44.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 4.3e-29 132.9 345 43.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.8e-26 122.5 107 60.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 5.8e-26 122.5 337 43.9
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 6.4e-25 119.0 310 46.1
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-22 111.3 203 49.3
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.3e-21 106.7 334 46.4
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.3e-21 106.7 101 62.4
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.3e-21 106.3 101 61.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.0e-19 99.8 295 41.7
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-17 93.6 84 65.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.4e-16 91.3 79 65.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.4e-16 90.5 62 64.5
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 3.2e-16 90.1 107 45.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.8e-14 84.3 89 57.3
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 3.0e-14 83.6 64 57.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.4e-13 79.0 108 50.9
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-11 75.1 138 38.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.4e-11 74.7 83 59.0
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 6.9e-11 72.4 82 57.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.6e-10 70.5 66 56.1
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.5e-09 65.9 81 50.6
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.6e-07 59.7 98 43.9
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.3e-06 58.2 258 49.6


User provided reference genes

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