Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 5.5e-74 280.8 134 100.0
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 3.8e-67 258.1 130 96.2
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 3.8e-67 258.1 130 96.2
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 3.8e-67 258.1 130 96.2
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 3.8e-67 258.1 130 96.2
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 5.0e-67 257.7 134 94.0
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 5.0e-67 257.7 125 97.6
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 5.0e-67 257.7 125 97.6
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 5.0e-67 257.7 125 97.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 6.5e-67 257.3 132 94.7
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 8.5e-67 256.9 125 97.6
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.1e-66 256.5 125 97.6
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 3.2e-66 255.0 125 96.0
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 3.2e-66 255.0 125 96.0
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 3.2e-66 255.0 129 96.1
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 7.2e-66 253.8 129 93.8
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 3.6e-65 251.5 125 96.0
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 4.7e-65 251.1 127 95.3
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 8.2e-62 240.4 123 91.9
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.8e-61 239.2 125 89.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.8e-61 239.2 125 89.6
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 1.8e-61 239.2 123 91.1
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 3.1e-61 238.4 123 91.1
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 7.0e-61 237.3 123 90.2
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 9.1e-61 236.9 123 90.2
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 90.2
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 88.6
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 88.6
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 88.6
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 90.2
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.6e-60 236.1 123 90.2
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.0e-60 235.7 123 89.4
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 89.4
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 89.4
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 88.6
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 89.4
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 89.4
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 89.4
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 3.5e-60 235.0 123 88.6
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.5e-60 234.6 123 88.6
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 5.9e-60 234.2 148 79.7
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 5.9e-60 234.2 123 89.4
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 7.7e-60 233.8 123 89.4
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.7e-60 233.8 123 88.6
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.0e-59 233.4 123 89.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.0e-59 233.4 123 88.6
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.0e-59 233.4 123 88.6
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-59 233.4 123 88.6
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-59 233.4 123 88.6
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.3e-59 233.0 123 88.6
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 1.3e-59 233.0 125 86.4
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.7e-59 232.6 123 88.6
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.7e-59 232.6 130 83.8
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.7e-59 232.6 123 87.0
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.2e-59 232.3 119 91.6
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 2.2e-59 232.3 123 87.8
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.2e-59 232.3 122 89.3
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.2e-59 232.3 123 88.6
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-59 231.9 123 88.6
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.9e-59 231.9 123 87.8
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.9e-59 231.9 123 88.6
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 5.0e-59 231.1 123 88.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 5.0e-59 231.1 123 87.0
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.0e-59 231.1 123 87.0
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 6.5e-59 230.7 125 84.8
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 6.5e-59 230.7 123 87.8
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 6.5e-59 230.7 123 87.8
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 8.5e-59 230.3 123 87.0
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 8.5e-59 230.3 123 87.8
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.5e-59 230.3 123 87.0
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 8.5e-59 230.3 123 86.2
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.5e-58 229.6 123 87.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.5e-58 229.6 123 86.2
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.9e-58 229.2 124 86.3
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-58 229.2 124 86.3
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-58 229.2 124 86.3
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.9e-58 229.2 123 87.0
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.5e-58 228.8 125 86.4
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.5e-58 228.8 125 86.4
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.2e-58 228.4 123 85.4
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.2e-58 228.4 122 86.9
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.2e-58 228.4 123 87.0
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.2e-58 228.4 123 87.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 4.2e-58 228.0 123 87.0
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 5.5e-58 227.6 123 86.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.5e-58 227.6 124 85.5
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.5e-58 227.6 125 84.8
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 5.5e-58 227.6 123 84.6
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.2e-58 227.3 123 86.2
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 9.4e-58 226.9 125 84.0
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 9.4e-58 226.9 123 85.4
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 2.1e-57 225.7 123 85.4
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 3.6e-57 224.9 136 78.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.7e-57 224.6 125 84.0
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.7e-57 224.6 125 84.0
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 4.7e-57 224.6 125 84.8
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 6.1e-57 224.2 118 89.8
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 8.0e-57 223.8 118 88.1
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.0e-56 223.4 123 83.7
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 1.0e-56 223.4 122 84.4
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.4e-56 223.0 123 84.6
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.4e-56 223.0 123 83.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.8e-56 222.6 123 82.9
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.8e-56 222.6 123 84.6
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.8e-56 222.6 122 84.4
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 2.3e-56 222.2 123 84.6
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 2.3e-56 222.2 123 84.6
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 2.3e-56 222.2 123 84.6
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 8.8e-56 220.3 123 82.9
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 8.8e-56 220.3 122 82.8
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.2e-55 219.9 123 83.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.5e-55 219.5 123 82.9
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 2.0e-55 219.2 123 82.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 2.0e-55 219.2 123 82.9
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 5.7e-55 217.6 118 84.7
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 7.5e-55 217.2 123 82.1
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 7.5e-55 217.2 123 82.1
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 9.8e-55 216.9 122 83.6
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.7e-54 216.1 154 70.8
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.8e-54 215.3 118 85.6
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 6.3e-54 214.2 125 81.6
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.2e-52 209.9 111 85.6
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 5.9e-52 207.6 128 78.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.3e-51 206.5 168 62.5
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.9e-51 205.3 123 77.2
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 6.5e-51 204.1 112 84.8
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 8.5e-51 203.8 126 78.6
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.1e-50 203.4 123 75.6
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 1.2e-49 199.9 118 77.1
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.6e-49 199.5 122 78.7
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 2.7e-49 198.7 112 83.9
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.7e-49 198.7 118 75.4
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.8e-48 196.1 110 84.5
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.3e-48 195.7 107 85.0
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 8.8e-48 193.7 106 87.7
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 9.1e-45 183.7 138 71.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.8e-43 178.3 147 63.3
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 5.2e-40 167.9 123 69.1
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.2e-39 166.8 98 83.7
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.8e-37 159.5 110 69.1
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 4.1e-37 158.3 80 93.8
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 3.5e-36 155.2 86 82.6
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 5.9e-36 154.5 123 64.2
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 7.8e-36 154.1 81 87.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.7e-35 152.9 81 86.4
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 5.0e-35 151.4 81 86.4
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 8.6e-35 150.6 84 82.1
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.9e-34 149.4 77 89.6
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 5.6e-34 147.9 83 81.9
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 7.3e-34 147.5 73 93.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 7.3e-34 147.5 76 90.8
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.6e-33 146.4 81 84.0
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.8e-33 145.6 178 47.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.1e-32 142.1 81 80.2
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 5.2e-32 141.4 120 60.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.2e-31 140.2 76 86.8
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.7e-30 136.3 109 63.3
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 3.7e-30 135.2 118 58.5
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.4e-29 132.5 127 58.3
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 9.2e-29 130.6 122 58.2
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 7.3e-26 120.9 64 89.1
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 2.8e-25 119.0 70 81.4
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-23 113.6 57 93.0
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 6.4e-22 107.8 57 84.2
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 4.6e-20 101.7 74 67.6
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 7.6e-15 84.3 42 92.9


User provided reference genes

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