Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14656 Brassica carinata HOM05D000519 ORTHO05D000959 1.3e-64 249.6 127 100.0
BcaB04g19211 Brassica carinata HOM05D000519 ORTHO05D000959 4.2e-31 138.3 125 65.6
A03p42900 Brassica napus HOM05D000519 ORTHO05D000959 2.7e-30 135.6 116 65.5
A03p42880 Brassica napus HOM05D000519 ORTHO05D000959 1.9e-28 129.4 124 60.5
BraA03t13434Z Brassica rapa HOM05D000519 ORTHO05D000959 1.9e-28 129.4 124 60.5
Sp7g15050 Schrenkiella parvula HOM05D000519 ORTHO05D000959 6.9e-18 94.4 108 53.7
Thhalv10026611m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.2e-16 89.4 108 51.9
BcaNung00185 Brassica carinata HOM05D000519 ORTHO05D000959 2.9e-16 89.0 108 50.9
BcaNung00187 Brassica carinata HOM05D000519 ORTHO05D000959 5.0e-16 88.2 99 52.5
CARHR222900 Cardamine hirsuta HOM05D000519 ORTHO05D000959 1.9e-15 86.3 96 53.1
BcaNung00188 Brassica carinata HOM05D000519 ORTHO05D000959 4.2e-15 85.1 110 50.9
A01p20960 Brassica napus HOM05D000519 ORTHO05D000959 4.2e-15 85.1 114 51.8
BraA01t02013Z Brassica rapa HOM05D000519 ORTHO05D000959 4.2e-15 85.1 114 51.8
AT4G16500 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 7.2e-15 84.3 113 49.6
Carub.0007s2500 Capsella rubella HOM05D000519 ORTHO05D000959 7.2e-15 84.3 113 49.6
AL7G38460 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 9.4e-15 84.0 112 50.9
Aa31LG3G7160 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.1e-14 82.8 107 50.5
BcaC07g37991 Brassica carinata HOM05D000519 ORTHO05D000959 2.1e-14 82.8 98 50.0
BolC8t48374H Brassica oleracea HOM05D000519 ORTHO05D000959 2.1e-14 82.8 98 50.0
Aa31LG3G7150 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.6e-14 82.0 107 49.5
A08p12510 Brassica napus HOM05D000519 ORTHO05D000959 3.6e-14 82.0 98 50.0
BraA08t33241Z Brassica rapa HOM05D000519 ORTHO05D000959 3.6e-14 82.0 98 50.0
C01p26260 Brassica napus HOM05D000519 ORTHO05D000959 6.1e-14 81.3 93 52.7
A01p20920 Brassica napus HOM05D000519 ORTHO05D000959 2.3e-13 79.3 107 48.6
DCAR_004907 Daucus carota HOM05D000519 ORTHO05D000959 1.1e-10 70.5 109 37.6
C01p26280 Brassica napus HOM05D020523 ORTHO05D000959 1.8e-10 69.7 116 44.8
BcaC06g33484 Brassica carinata HOM05D000519 ORTHO05D016725 6.9e-10 67.8 112 42.0
BcaC06g33485 Brassica carinata HOM05D000519 ORTHO05D016725 6.9e-10 67.8 112 42.0
C07p47950 Brassica napus HOM05D000519 ORTHO05D016725 6.9e-10 67.8 112 42.0
BolC7t45318H Brassica oleracea HOM05D000519 ORTHO05D016725 6.9e-10 67.8 112 42.0
BcaC09g50358 Brassica carinata HOM05D020523 ORTHO05D000959 9.1e-10 67.4 116 44.0
BolC1t02574H Brassica oleracea HOM05D020523 ORTHO05D000959 9.1e-10 67.4 116 44.0
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 1.2e-09 67.0 108 40.7
A01p20970 Brassica napus HOM05D020523 ORTHO05D000959 1.5e-09 66.6 111 45.0
BraA01t02014Z Brassica rapa HOM05D020523 ORTHO05D000959 2.6e-09 65.9 116 43.1
Aa31LG2G12570 Aethionema arabicum HOM05D000519 ORTHO05D019510 3.4e-09 65.5 108 40.7
A03p49900 Brassica napus HOM05D000519 ORTHO05D016725 5.9e-09 64.7 110 40.9
BraA03t14084Z Brassica rapa HOM05D000519 ORTHO05D016725 5.9e-09 64.7 110 40.9
Aa31LG3G7170 Aethionema arabicum HOM05D000519 ORTHO05D000959 7.7e-09 64.3 62 61.3
Aa31LG9G7070 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.0e-08 63.9 112 40.2
Aa31LG2G12590 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.3e-08 63.5 106 42.5
Aa31LG9G7000 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.2e-08 62.8 110 40.0
THA.LOC104817839 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 2.2e-08 62.8 106 37.7
Aa31sc265G20 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.8e-08 62.0 112 39.3
SalBow8G0429 Salvia bowleyana HOM05D000519 ORTHO05D000959 3.8e-08 62.0 91 41.8
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 5.0e-08 61.6 96 47.9
Aa31LG9G7030 Aethionema arabicum HOM05D000519 ORTHO05D000959 5.0e-08 61.6 104 40.4
C01p26270 Brassica napus HOM05D000519 ORTHO05D000959 6.5e-08 61.2 71 50.7
SalBow8G0930 Salvia bowleyana HOM05D000519 ORTHO05D000959 6.5e-08 61.2 77 44.2
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 8.5e-08 60.8 89 40.4
BcaC06g31370 Brassica carinata HOM05D000519 ORTHO05D000959 1.4e-07 60.1 97 39.2
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 1.4e-07 60.1 97 39.2
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 1.4e-07 60.1 97 39.2
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 1.4e-07 60.1 97 39.2
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 1.9e-07 59.7 93 40.9
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 1.9e-07 59.7 96 37.5
Sp7g15060 Schrenkiella parvula HOM05D000519 ORTHO05D016725 1.9e-07 59.7 111 40.5
MSTRG.7159 Avicennia marina HOM05D000519 ORTHO05D000959 2.5e-07 59.3 79 45.6
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 3.2e-07 58.9 97 37.1
A08p12530 Brassica napus HOM05D030867 ORTHO05D027735 3.2e-07 58.9 108 36.1
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 3.2e-07 58.9 97 37.1
BraA08t33242Z Brassica rapa HOM05D030867 ORTHO05D027735 3.2e-07 58.9 108 36.1
Aa31LG2G12600 Aethionema arabicum HOM05D000519 ORTHO05D000959 4.2e-07 58.5 72 44.4
BolC8t48375H Brassica oleracea HOM05D030867 ORTHO05D027735 5.5e-07 58.2 108 36.1
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 5.5e-07 58.2 89 38.2
PGSC0003DMG400047215 Solanum tuberosum HOM05D000519 ORTHO05D000959 5.5e-07 58.2 85 38.8
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 7.2e-07 57.8 91 40.7
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 9.4e-07 57.4 75 41.3
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 1.2e-06 57.0 113 36.3
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.6e-06 56.6 96 35.4
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 1.6e-06 56.6 86 38.4
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 1.6e-06 56.6 86 38.4
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 2.1e-06 56.2 97 37.1
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.1e-06 56.2 94 40.4
Sopen04g006910 Solanum pennellii HOM05D000519 ORTHO05D000959 2.1e-06 56.2 88 35.2
Aqoxy1G04041 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 2.7e-06 55.8 70 47.1
PGSC0003DMG400041780 Solanum tuberosum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 85 36.5
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 3.6e-06 55.5 75 38.7
Solyc04g014780.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 3.6e-06 55.5 76 38.2
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 3.6e-06 55.5 95 35.8
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 3.6e-06 55.5 95 35.8
Aa31LG7G5010 Aethionema arabicum HOM05D000519 ORTHO05D000959 6.1e-06 54.7 92 46.7
BcaC02g10392 Brassica carinata HOM05D000519 ORTHO05D000959 6.1e-06 54.7 95 33.7
C04p29440 Brassica napus HOM05D000519 ORTHO05D000959 6.1e-06 54.7 95 33.7
Aa31LG2G12580 Aethionema arabicum HOM05D000519 ORTHO05D000959 7.9e-06 54.3 74 41.9
A01p20930 Brassica napus HOM05D000519 ORTHO05D000959 7.9e-06 54.3 56 48.2
A01p20940 Brassica napus HOM05D000519 ORTHO05D000959 7.9e-06 54.3 56 48.2
BraA01t02011Z Brassica rapa HOM05D000519 ORTHO05D000959 7.9e-06 54.3 56 48.2


User provided reference genes

Program Settings