Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 0.0e+00 1203.0 690 100.0
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.8e-253 879.4 722 78.3
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 6.6e-248 860.9 734 75.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-247 859.4 709 78.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 4.3e-239 831.6 737 73.0
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.4e-226 790.0 736 71.3
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.8e-219 765.4 741 69.6
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.4e-213 746.1 728 69.5
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.0e-212 743.0 576 80.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 9.7e-207 724.2 715 70.2
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.8e-205 719.9 782 63.7
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.2e-203 713.0 744 66.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 5.7e-199 698.4 720 68.5
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 5.3e-197 691.8 717 67.6
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.5e-196 689.1 769 65.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 7.7e-196 688.0 715 67.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.9e-194 683.3 696 68.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.1e-193 678.3 709 64.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 5.0e-179 632.1 711 64.6
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.2e-178 629.4 745 57.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 7.2e-178 628.2 750 55.9
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 4.1e-165 585.9 584 69.5
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-163 580.9 581 69.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.6e-163 578.2 689 63.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 4.5e-119 433.0 826 44.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-110 405.2 771 41.8
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-110 404.8 755 42.4
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-109 401.7 787 41.9
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.6e-108 396.4 791 39.8
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-107 395.2 724 42.8
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 3.9e-107 393.3 746 44.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 5.1e-107 392.9 792 40.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 8.7e-107 392.1 813 41.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.1e-106 391.7 701 41.5
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-106 389.8 768 41.4
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 9.6e-106 388.7 773 41.8
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 2.8e-105 387.1 819 41.4
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-105 387.1 766 41.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 3.7e-105 386.7 812 41.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.9e-104 382.5 781 39.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-103 381.7 608 47.2
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.5e-103 381.3 465 51.8
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.8e-103 379.4 702 42.6
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.9e-102 377.1 809 38.7
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 6.5e-102 375.9 766 43.7
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.9e-101 374.4 814 39.8
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.5e-101 374.0 780 40.0
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.3e-99 368.2 616 45.0
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 3.0e-99 367.1 809 42.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 3.3e-98 363.6 821 40.7
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.8e-97 359.8 755 42.3
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.1e-96 358.6 437 57.0
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.4e-96 358.2 597 48.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.1e-96 357.1 571 43.3
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 5.3e-96 356.3 799 39.3
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.2e-95 355.1 790 39.1
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.5e-95 354.8 659 44.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 3.4e-95 353.6 785 39.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.3e-94 351.7 822 38.2
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.2e-94 350.9 789 38.8
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.9e-94 350.5 776 40.5
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.9e-94 350.5 542 45.2
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.5e-93 347.4 774 39.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 5.5e-93 346.3 778 41.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.5e-93 346.3 806 37.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 9.4e-93 345.5 477 48.2
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.1e-92 344.4 829 39.1
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.1e-92 344.4 795 37.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.6e-92 343.6 780 42.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 6.1e-92 342.8 716 41.2
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.1e-92 342.8 818 36.7
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.0e-91 340.5 753 38.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.3e-90 337.0 545 44.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 4.3e-90 336.7 795 40.6
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.4e-90 335.9 755 40.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.3e-89 335.1 815 40.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.2e-89 334.3 784 38.3
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.7e-89 333.6 590 42.0
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 8.2e-89 332.4 784 37.4
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 6.9e-88 329.3 805 36.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.9e-88 329.3 590 41.2
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.2e-87 328.6 686 38.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.5e-87 326.6 788 37.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.2e-86 324.3 358 54.2
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.2e-86 324.3 774 36.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.9e-86 323.9 809 37.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.8e-86 323.6 534 44.6
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 5.0e-86 323.2 639 40.7
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.5e-86 322.8 641 39.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.5e-85 320.9 811 35.9
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.2e-84 318.5 815 38.8
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-84 318.2 758 37.6
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.1e-84 317.8 494 49.6
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 6.1e-84 316.2 527 48.8
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.9e-84 315.8 816 39.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 7.9e-84 315.8 743 35.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.8e-83 314.7 539 43.4
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.9e-83 313.5 754 38.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 5.7e-82 309.7 844 37.6
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 7.4e-82 309.3 644 41.8
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.7e-81 307.0 523 45.5
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.4e-80 305.1 713 38.4
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 5.3e-80 303.1 680 41.9
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 4.5e-79 300.1 600 42.3
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 4.5e-79 300.1 779 38.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 5.9e-79 299.7 545 47.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.9e-79 299.7 516 46.3
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.0e-78 298.9 484 46.7
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 2.9e-78 297.4 453 45.9
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.0e-78 296.6 578 41.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.1e-77 295.4 811 38.7
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 4.2e-77 293.5 621 41.7
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.5e-77 293.1 501 48.7
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 4.4e-74 283.5 780 36.3
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.1e-72 278.9 805 37.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.1e-72 278.9 606 41.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.8e-72 278.1 670 39.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 5.3e-72 276.6 817 37.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.2e-71 275.4 759 38.1
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.7e-71 274.2 705 38.9
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.0e-70 272.3 766 38.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.2e-70 271.2 671 38.7
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.1e-68 264.6 996 30.7
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.1e-68 264.6 498 44.4
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 8.8e-67 259.2 502 44.8
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.5e-66 258.5 299 53.5
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.2e-63 248.8 695 37.7
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 2.0e-63 248.1 592 38.9
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.5e-63 247.3 486 43.2
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.0e-62 245.7 638 41.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.1e-56 225.7 666 36.5
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 7.8e-47 193.0 800 31.1
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.0e-46 190.3 575 34.6
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-44 185.3 327 49.5
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.0e-42 178.3 757 30.0
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.2e-39 169.1 178 55.6
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.9e-38 164.1 422 33.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.5e-37 162.2 269 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.9e-37 161.8 421 34.2
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.0e-34 151.8 415 34.2
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.5e-34 149.8 423 31.9
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.7e-33 148.7 114 67.5
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.6e-31 140.6 389 41.4
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 4.7e-28 130.6 387 30.7
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 2.0e-26 125.2 137 54.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 3.4e-26 124.4 100 67.0
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 5.8e-26 123.6 374 32.9
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.6e-20 105.5 474 27.4
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.2e-19 100.5 93 60.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-18 97.8 76 71.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.6e-18 96.7 76 71.1
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.9e-17 94.0 66 74.2
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-16 92.8 63 76.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.4e-16 90.5 170 42.4
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-15 89.0 68 70.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-14 85.5 67 67.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.7e-14 85.5 71 66.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-14 84.3 56 78.6
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-14 83.6 56 76.8
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 6.6e-14 83.6 597 26.3
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 8.7e-14 83.2 56 71.4
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-13 82.0 55 76.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.5e-13 81.6 85 51.8
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.6e-13 80.5 56 73.2
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-12 77.4 56 69.6
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 6.2e-12 77.0 49 81.6
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-11 75.9 63 68.3
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.5e-10 72.4 103 43.7
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-09 68.6 50 70.0
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 4.9e-09 67.4 63 60.3
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-09 67.0 50 68.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.4e-09 66.6 51 68.6
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.1e-08 63.5 39 82.1
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-07 62.0 39 79.5
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-07 60.8 39 79.5
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 4.6e-07 60.8 79 45.6
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 7.9e-07 60.1 38 78.9
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.8e-06 58.9 53 62.3
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.3e-06 58.5 38 76.3
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.9e-06 57.8 35 88.6
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-06 57.8 39 71.8


User provided reference genes

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