Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14578 Brassica carinata HOM05D003621 ORTHO05D004259 9.6e-71 270.0 133 100.0
Thhalv10002506m.g Eutrema salsugineum HOM05D003621 ORTHO05D004259 3.0e-40 168.7 256 43.4
BcaC06g35719 Brassica carinata HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
A07p07780 Brassica napus HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
C07p11700 Brassica napus HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
BolC7t41643H Brassica oleracea HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
BraA07t28569Z Brassica rapa HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
Sp3g22320 Schrenkiella parvula HOM05D003621 ORTHO05D004259 5.2e-40 167.9 256 43.0
BcaB06g26656 Brassica carinata HOM05D003621 ORTHO05D004259 1.1e-39 166.8 256 42.6
CARHR100670 Cardamine hirsuta HOM05D003621 ORTHO05D004259 4.8e-38 161.4 256 41.8
AL3G40070 Arabidopsis lyrata HOM05D003621 ORTHO05D004259 6.3e-38 161.0 256 41.0
AT3G24530 Arabidopsis thaliana HOM05D003621 ORTHO05D004259 6.3e-38 161.0 256 41.0
Carub.0003s2492 Capsella rubella HOM05D003621 ORTHO05D004259 1.4e-37 159.8 256 41.0
Aa31sc29G80 Aethionema arabicum HOM05D003621 ORTHO05D004259 5.0e-35 151.4 256 38.7
CiPaw.04G163500 Carya illinoinensis HOM05D003621 ORTHO05D004259 7.5e-31 137.5 254 35.0
Cfa021562 Carpinus fangiana HOM05D003621 ORTHO05D004259 9.7e-31 137.1 256 35.2
Aa31sc99G150 Aethionema arabicum HOM05D003621 ORTHO05D004259 2.2e-30 136.0 253 36.4
Haze_25724 Corylus avellana HOM05D003621 ORTHO05D004259 2.2e-30 136.0 256 35.2
Haze_25731 Corylus avellana HOM05D003621 ORTHO05D004259 2.2e-30 136.0 256 35.9
THA.LOC104808764 Tarenaya hassleriana HOM05D003621 ORTHO05D004259 2.2e-30 136.0 127 58.3
DCAR_028707 Daucus carota HOM05D003621 ORTHO05D004259 6.3e-30 134.4 256 34.4
Lalb_Chr14g0371541 Lupinus albus HOM05D003621 ORTHO05D004259 8.3e-30 134.0 256 35.5
Thecc.09G109600 Theobroma cacao HOM05D003621 ORTHO05D004259 8.3e-30 134.0 256 34.4
Sc08g0007530 Simmondsia chinensis HOM05D003621 ORTHO05D004259 1.1e-29 133.7 256 34.8
Manes.03G021400 Manihot esculenta HOM05D003621 ORTHO05D004259 1.4e-29 133.3 256 34.4
TWI34G1138 Tripterygium wilfordii HOM05D003621 ORTHO05D004259 1.4e-29 133.3 255 34.1
Hma1.2p1_0018F.1_g013590 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 1.8e-29 132.9 256 34.4
PGR142G3711 Punica granatum HOM05D003621 ORTHO05D004259 2.4e-29 132.5 256 34.0
Dinv41608 Davidia involucrata HOM05D003621 ORTHO05D004259 3.1e-29 132.1 256 34.4
CiPaw.03G231600 Carya illinoinensis HOM05D003621 ORTHO05D004259 4.1e-29 131.7 127 51.2
Manes.16G115500 Manihot esculenta HOM05D003621 ORTHO05D004259 4.1e-29 131.7 255 34.1
Ca_03977_v3 Cicer arietinum L. HOM05D003621 ORTHO05D004259 5.3e-29 131.3 256 34.8
Gohir.A07G006000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 5.3e-29 131.3 254 35.0
Gorai.001G005600 Gossypium raimondii HOM05D003621 ORTHO05D004259 5.3e-29 131.3 254 35.0
Lj2g0018985 Lotus japonicus HOM05D003621 ORTHO05D004259 7.0e-29 131.0 256 34.4
Oeu044981.1 Olea europaea HOM05D003621 ORTHO05D004259 7.0e-29 131.0 256 33.6
arahy.Tifrunner.gnm1.ann1.EYQI1F Arachis hypogaea HOM05D003621 ORTHO05D004259 9.1e-29 130.6 254 34.3
arahy.Tifrunner.gnm1.ann1.VSCA53 Arachis hypogaea HOM05D003621 ORTHO05D004259 9.1e-29 130.6 254 34.3
COL.COLO4_34873 Corchorus olitorius HOM05D003621 ORTHO05D004259 9.1e-29 130.6 256 34.0
Duzib168G1477 Durio zibethinus HOM05D003621 ORTHO05D004259 9.1e-29 130.6 256 34.0
Hund09208 Selenicereus undatus HOM05D003621 ORTHO05D004259 1.2e-28 130.2 254 35.4
TWI63G0694 Tripterygium wilfordii HOM05D003621 ORTHO05D004259 1.2e-28 130.2 255 33.3
Dinv36637 Davidia involucrata HOM05D003621 ORTHO05D004259 1.6e-28 129.8 254 33.9
Gohir.D07G006000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 2.0e-28 129.4 254 34.6
CSS0049361 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.7e-28 129.0 256 34.4
Ciclev10008142m.g Citrus clementina HOM05D003621 ORTHO05D004259 2.7e-28 129.0 253 33.6
FAN26G0011 Fragaria x ananassa HOM05D003621 ORTHO05D004259 2.7e-28 129.0 256 32.4
TPR.G25311 Trifolium pratense HOM05D003621 ORTHO05D004259 2.7e-28 129.0 256 34.0
Prupe.7G232000 Prunus persica HOM05D003621 ORTHO05D004259 3.5e-28 128.6 256 32.8
MD15G1184200 Malus domestica HOM05D003621 ORTHO05D004259 4.5e-28 128.3 256 32.4
Actinidia09421 Actinidia chinensis HOM05D003621 ORTHO05D004259 5.9e-28 127.9 256 34.0
Lj7A651T32 Lonicera japonica HOM05D003621 ORTHO05D004259 7.7e-28 127.5 256 33.6
Atru.chr7.1358 Acer truncatum HOM05D003621 ORTHO05D004259 1.0e-27 127.1 253 34.8
CSS0027044 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.0e-27 127.1 256 34.0
Hund26199 Selenicereus undatus HOM05D003621 ORTHO05D004259 1.0e-27 127.1 256 34.8
GSVIVG01015385001 Vitis vinifera HOM05D003621 ORTHO05D004259 1.0e-27 127.1 255 32.5
CsaV3_3G015870 Cucumis sativus L. HOM05D003621 ORTHO05D004259 1.3e-27 126.7 256 34.4
FvH4_1g04710 Fragaria vesca HOM05D003621 ORTHO05D004259 1.3e-27 126.7 256 32.4
FAN19G2426 Fragaria x ananassa HOM05D003621 ORTHO05D004259 1.3e-27 126.7 256 32.4
Psat1g042960 Pisum sativum HOM05D003621 ORTHO05D004259 1.3e-27 126.7 256 32.8
EL10Ac8g18488 Beta vulgaris HOM05D003621 ORTHO05D004259 2.2e-27 125.9 255 34.5
CSS0004511 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.2e-27 125.9 256 33.6
MELO3C006786.2 Cucumis melo HOM05D003621 ORTHO05D004259 2.2e-27 125.9 256 34.0
Glyma.09G191100 Glycine max HOM05D003621 ORTHO05D004259 2.2e-27 125.9 256 32.4
QL02p085200 Quercus lobata HOM05D003621 ORTHO05D004259 2.2e-27 125.9 254 33.9
Ah.14g082090 Amaranthus hybridus HOM05D003621 ORTHO05D004259 2.9e-27 125.6 256 34.4
FAN28G1412 Fragaria x ananassa HOM05D003621 ORTHO05D004259 2.9e-27 125.6 256 32.0
MD02G1046000 Malus domestica HOM05D003621 ORTHO05D004259 2.9e-27 125.6 256 32.4
ECA240G2782 Erigeron canadensis HOM05D003621 ORTHO05D004259 3.8e-27 125.2 256 33.2
Eucgr.C01036 Eucalyptus grandis HOM05D003621 ORTHO05D004259 3.8e-27 125.2 256 33.6
FAN23G2072 Fragaria x ananassa HOM05D003621 ORTHO05D004259 3.8e-27 125.2 256 32.0
Medtr6g088470 Medicago truncatula HOM05D003621 ORTHO05D004259 3.8e-27 125.2 256 33.2
RcHm_v2.0_Chr2g0090311 Rosa chinensis HOM05D003621 ORTHO05D004259 3.8e-27 125.2 256 32.0
Lalb_Chr24g0397591 Lupinus albus HOM05D003621 ORTHO05D004259 5.0e-27 124.8 256 34.0
CAN.G1529.8 Capsicum annuum HOM05D003621 ORTHO05D004259 6.5e-27 124.4 255 32.5
Cpa.g.sc23.101 Carica papaya HOM05D003621 ORTHO05D004259 6.5e-27 124.4 256 33.2
Glyma.07G085800 Glycine max HOM05D003621 ORTHO05D004259 6.5e-27 124.4 256 32.8
RhsimUnG0196500 Rhododendron simsii HOM05D003621 ORTHO05D004259 6.5e-27 124.4 254 33.1
VMungo0464G0841 Vigna mungo HOM05D003621 ORTHO05D004259 6.5e-27 124.4 256 32.4
ClCG05G007150 Citrullus lanatus HOM05D003621 ORTHO05D004259 8.5e-27 124.0 256 32.8
Cc06_g09720 Coffea canephora HOM05D003621 ORTHO05D004259 1.1e-26 123.6 256 32.0
HanXRQChr09g0239661 Helianthus annuus HOM05D003621 ORTHO05D004259 1.5e-26 123.2 256 32.8
SGA_v2.0_scaffold30G12371 Striga asiatica HOM05D003621 ORTHO05D004259 1.5e-26 123.2 232 33.6
Duzib187G1605 Durio zibethinus HOM05D003621 ORTHO05D004259 1.9e-26 122.9 255 33.3
AUR62021495 Chenopodium quinoa HOM05D003621 ORTHO05D004259 3.2e-26 122.1 256 33.6
Sed0008991 Sechium edule HOM05D003621 ORTHO05D004259 3.2e-26 122.1 256 31.6
Gohir.D13G202000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 4.2e-26 121.7 254 32.3
Gorai.013G230900 Gossypium raimondii HOM05D003621 ORTHO05D004259 4.2e-26 121.7 254 32.3
Sopen07g012210 Solanum pennellii HOM05D003621 ORTHO05D004259 4.2e-26 121.7 256 32.0
AUR62010986 Chenopodium quinoa HOM05D003621 ORTHO05D004259 7.2e-26 120.9 254 33.5
Lsat_1_v5_gn_7_40780 Lactuca sativa HOM05D003621 ORTHO05D004259 7.2e-26 120.9 258 32.9
Phvul.004G163800 Phaseolus vulgaris HOM05D003621 ORTHO05D004259 7.2e-26 120.9 256 32.0
TAR636G2961 Trochodendron aralioides HOM05D003621 ORTHO05D004259 9.4e-26 120.6 256 31.6
Nitab4.5_0002904g0090 Nicotiana tabacum HOM05D003621 ORTHO05D004259 2.1e-25 119.4 255 30.6
Nitab4.5_0005947g0020 Nicotiana tabacum HOM05D003621 ORTHO05D004259 2.1e-25 119.4 255 31.0
Solyc12g007100.2 Solanum lycopersicum HOM05D003621 ORTHO05D004259 2.1e-25 119.4 255 32.2
PGSC0003DMG400000311 Solanum tuberosum HOM05D003621 ORTHO05D004259 2.7e-25 119.0 255 31.4
PSO782G0111 Papaver somniferum HOM05D003621 ORTHO05D004259 3.6e-25 118.6 127 48.0
Sopen12g003080 Solanum pennellii HOM05D003621 ORTHO05D004259 3.6e-25 118.6 255 31.0
vmacro06217 Vaccinium macrocarpon HOM05D003621 ORTHO05D004259 3.6e-25 118.6 256 31.6
Gohir.A13G196700 Gossypium hirsutum HOM05D003621 ORTHO05D004259 4.7e-25 118.2 254 31.9
Peaxi162Scf00546g00023 Petunia axillaris HOM05D003621 ORTHO05D004259 4.7e-25 118.2 255 30.2
Migut.J01155 Erythranthe guttata HOM05D003621 ORTHO05D004259 6.1e-25 117.9 257 31.5
Peaxi162Scf00231g00033 Petunia axillaris HOM05D003621 ORTHO05D004259 6.1e-25 117.9 256 31.6
unitig_22.g6628 Utricularia gibba HOM05D003621 ORTHO05D004259 6.1e-25 117.9 99 54.5
Aqoxy7G01646 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 1.8e-24 116.3 256 32.0
Solyc07g023990.3 Solanum lycopersicum HOM05D003621 ORTHO05D004259 1.8e-24 116.3 93 59.1
MSTRG.19588 Avicennia marina HOM05D003621 ORTHO05D004259 2.3e-24 115.9 256 31.2
Nitab4.5_0004562g0010 Nicotiana tabacum HOM05D003621 ORTHO05D004259 2.3e-24 115.9 240 32.9
PSO832G1684 Papaver somniferum HOM05D003621 ORTHO05D004259 2.3e-24 115.9 127 47.2
Potri.006G158600 Populus trichocarpa HOM05D003621 ORTHO05D004259 2.3e-24 115.9 253 31.6
PGSC0003DMG400030220 Solanum tuberosum HOM05D003621 ORTHO05D004259 2.3e-24 115.9 256 30.9
Sed0020967 Sechium edule HOM05D003621 ORTHO05D004259 4.0e-24 115.2 87 59.8
HanXRQChr10g0318561 Helianthus annuus HOM05D003621 ORTHO05D004259 5.2e-24 114.8 256 31.2
vmacro10501 Vaccinium macrocarpon HOM05D003621 ORTHO05D004259 6.8e-24 114.4 91 56.0
Potri.018G081000 Populus trichocarpa HOM05D003621 ORTHO05D004259 1.2e-23 113.6 124 49.2
Sabra18G0068200 Salix brachista HOM05D003621 ORTHO05D004259 1.2e-23 113.6 253 32.4
TAR624G1386 Trochodendron aralioides HOM05D003621 ORTHO05D004259 1.2e-23 113.6 254 31.1
Nitab4.5_0000114g0080 Nicotiana tabacum HOM05D003621 ORTHO05D004259 4.4e-23 111.7 256 30.1
ATR0315G144 Amborella trichopoda HOM05D003621 ORTHO05D004259 1.7e-22 109.8 93 57.0
HPP92_005264 Vanilla planifolia HOM05D003621 ORTHO05D004259 2.2e-22 109.4 92 54.3
Nn2g11728 Nelumbo nucifera HOM05D003621 ORTHO05D004259 8.3e-22 107.5 95 52.6
Nn8g39169 Nelumbo nucifera HOM05D003621 ORTHO05D004259 8.3e-22 107.5 95 54.7
SEGI_35600 Sequoiadendron giganteum HOM05D003621 ORTHO05D004259 8.3e-22 107.5 253 30.0
Nn8g39165 Nelumbo nucifera HOM05D003621 ORTHO05D004259 4.1e-21 105.1 95 53.7
Cc00_g28820 Coffea canephora HOM05D003621 ORTHO05D004259 1.6e-20 103.2 127 44.9
Os02g0266300 Oryza sativa ssp. japonica HOM05D003621 ORTHO05D004259 1.6e-20 103.2 92 52.2
Zm00001eb204000 Zea mays HOM05D003621 ORTHO05D004259 3.5e-20 102.1 91 53.8
Aqoxy7G01647 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 7.7e-20 100.9 216 30.1
CDE02G2554 Ceratophyllum demersum HOM05D003621 ORTHO05D004259 1.0e-19 100.5 99 44.4
CDE08G0484 Ceratophyllum demersum HOM05D003621 ORTHO05D004259 2.3e-19 99.4 99 43.4
SHI02763 Sapria himalayana HOM05D003621 ORTHO05D004259 8.6e-19 97.4 94 50.0
Actinidia32682 Actinidia chinensis HOM05D003621 ORTHO05D004259 1.1e-18 97.1 206 34.5
Sabra06G0123800 Salix brachista HOM05D000193 ORTHO05D000402 1.9e-18 96.3 80 58.8
Nn8g39167 Nelumbo nucifera HOM05D003621 ORTHO05D004259 9.5e-18 94.0 195 37.4
Migut.J01147 Erythranthe guttata HOM05D003621 ORTHO05D004259 1.2e-17 93.6 129 41.9
Migut.J01103 Erythranthe guttata HOM05D003621 ORTHO05D004259 4.7e-17 91.7 128 40.6
Migut.J01117 Erythranthe guttata HOM05D003621 ORTHO05D004259 8.0e-17 90.9 97 48.5
Migut.J01104 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.3e-16 89.4 98 46.9
Migut.J01116 Erythranthe guttata HOM05D003621 ORTHO05D004259 4.0e-16 88.6 98 46.9
Oeu064901.1 Olea europaea HOM05D003621 ORTHO05D004259 8.9e-16 87.4 91 49.5
Aqoxy7G01648 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 2.6e-15 85.9 93 44.1
Migut.J01110 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.6e-15 85.9 97 46.4
SalBow6G4774 Salvia bowleyana HOM05D003621 ORTHO05D004259 3.4e-15 85.5 229 29.3
SalBow6G5466 Salvia bowleyana HOM05D003621 ORTHO05D000122 3.4e-15 85.5 131 41.2
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 7.5e-15 84.3 85 45.9
SGA_v2.0_scaffold137G35130 Striga asiatica HOM05D003621 ORTHO05D004259 7.5e-15 84.3 129 37.2
Migut.J01113 Erythranthe guttata HOM05D003621 ORTHO05D004259 9.8e-15 84.0 98 45.9
SGA_v2.0_scaffold10G05155 Striga asiatica HOM05D003621 ORTHO05D004259 1.7e-14 83.2 89 50.6
Migut.J01112 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.2e-14 82.8 98 44.9
Migut.J01119 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.2e-14 82.8 128 35.9
HanXRQChr16g0522441 Helianthus annuus HOM05D003621 ORTHO05D004259 4.9e-14 81.6 77 49.4
Migut.J01118 Erythranthe guttata HOM05D003621 ORTHO05D004259 8.3e-14 80.9 98 40.8
Migut.J01111 Erythranthe guttata HOM05D003621 ORTHO05D004259 4.1e-13 78.6 248 26.6
SalBow6G6039 Salvia bowleyana HOM05D003621 ORTHO05D004259 9.2e-13 77.4 97 45.4
SalBow6G0300 Salvia bowleyana HOM05D003621 ORTHO05D004259 2.7e-12 75.9 96 42.7
Dinv30495 Davidia involucrata HOM05D003621 ORTHO05D004259 1.3e-11 73.6 99 37.4
SalBow6G1987 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.3e-11 73.6 93 41.9
Migut.G00929 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.3e-11 72.8 86 45.3
SalBow6G2522 Salvia bowleyana HOM05D003621 ORTHO05D004259 8.6e-11 70.9 86 44.2
Aqoxy3G01597 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 4.3e-10 68.6 58 55.2
Hma1.2p1_1455F.1_g284390 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 5.6e-10 68.2 98 37.8
SalBow6G3329 Salvia bowleyana HOM05D003621 ORTHO05D004259 6.1e-09 64.7 96 39.6
Hma1.2p1_0001F.1_g001560 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 3.1e-08 62.4 96 36.5
Oeu023080.1 Olea europaea HOM05D003621 ORTHO05D004259 3.1e-08 62.4 34 82.4
SalBow6G3888 Salvia bowleyana HOM05D003621 ORTHO05D004259 2.6e-07 59.3 118 36.4
SalBow6G4876 Salvia bowleyana HOM05D003621 ORTHO05D004259 7.5e-07 57.8 33 72.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 9.8e-07 57.4 32 78.1
Lsat_1_v5_gn_3_101741 Lactuca sativa HOM05D003621 ORTHO05D004259 1.3e-06 57.0 44 56.8
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 4.9e-06 55.1 32 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1977 Anthoceros agrestis HOM05D003621 ORTHO05D004259 6.4e-06 54.7 34 70.6


User provided reference genes

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