Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.8e-87 323.6 177 100.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 3.8e-83 311.6 170 100.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-66 255.4 182 84.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.1e-60 236.1 185 76.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 2.3e-59 232.6 184 75.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.5e-58 229.2 184 75.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.3e-58 228.4 161 80.7
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 4.3e-58 228.4 183 75.4
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 4.3e-58 228.4 183 75.4
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.7e-57 224.9 184 73.9
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 8.1e-57 224.2 162 80.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.8e-55 218.0 214 64.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.7e-52 209.1 182 67.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.6e-52 208.4 172 75.0
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.0e-51 205.7 182 66.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.0e-51 205.7 180 65.6
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 5.1e-51 204.9 180 65.6
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-50 203.8 180 65.6
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-50 203.0 182 64.3
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.5e-50 202.6 180 65.0
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.6e-49 199.9 180 64.4
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.6e-49 199.9 182 66.5
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.6e-49 198.7 182 64.8
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 4.7e-49 198.4 187 63.6
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 8.1e-49 197.6 182 65.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.4e-48 196.1 182 64.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.1e-48 195.7 182 64.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.0e-48 195.3 182 61.5
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 4.0e-48 195.3 182 63.2
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.0e-48 195.3 182 64.8
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 6.8e-48 194.5 180 62.8
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 6.8e-48 194.5 190 62.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 8.9e-48 194.1 182 63.7
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.9e-48 194.1 185 63.2
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.0e-47 193.0 161 67.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.4e-47 192.2 190 61.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.4e-47 192.2 182 63.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 5.8e-47 191.4 182 62.6
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 5.8e-47 191.4 182 61.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 5.8e-47 191.4 182 64.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.6e-47 191.0 182 62.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 7.6e-47 191.0 182 60.4
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 7.6e-47 191.0 161 68.3
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 9.9e-47 190.7 182 60.4
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.3e-46 190.3 161 68.9
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.7e-46 189.9 182 62.1
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.2e-46 189.5 182 64.8
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.9e-46 189.1 190 60.5
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.8e-46 188.7 182 63.2
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.4e-46 188.0 160 68.1
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.4e-46 188.0 171 65.5
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.9e-45 186.4 182 63.2
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.9e-45 186.4 182 60.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.4e-45 186.0 160 66.9
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.2e-45 185.7 182 61.0
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 4.2e-45 185.3 182 62.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 4.2e-45 185.3 181 63.0
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 5.4e-45 184.9 168 64.3
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 5.4e-45 184.9 182 59.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.2e-44 183.7 182 62.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.2e-44 183.7 182 59.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.6e-44 181.8 182 60.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 4.6e-44 181.8 207 55.1
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 4.6e-44 181.8 182 61.0
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 4.6e-44 181.8 164 67.7
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 6.0e-44 181.4 182 60.4
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 6.0e-44 181.4 163 66.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.0e-43 180.6 182 60.4
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.3e-43 180.3 184 62.5
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.3e-43 180.3 184 60.9
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.3e-43 179.5 162 64.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 3.0e-43 179.1 160 63.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.9e-43 178.7 163 65.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 5.1e-43 178.3 161 65.8
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.1e-42 177.2 161 65.8
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-42 176.8 182 59.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-42 176.8 123 78.9
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-42 176.8 182 57.7
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-42 176.8 180 58.3
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.9e-42 176.4 180 56.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.3e-42 175.6 197 55.3
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.3e-42 175.6 185 57.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 7.3e-42 174.5 161 62.1
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 9.6e-42 174.1 181 58.6
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 9.6e-42 174.1 182 58.2
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-41 173.7 182 59.3
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.3e-41 173.7 182 58.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.6e-41 173.3 182 59.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.8e-41 172.6 183 58.5
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 3.6e-41 172.2 228 49.6
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.6e-41 172.2 204 52.5
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 7.6e-39 164.5 177 61.0
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.6e-39 164.5 185 56.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.8e-38 162.2 180 57.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 8.4e-38 161.0 182 54.4
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-37 160.2 156 59.6
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.4e-37 159.5 135 66.7
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.2e-37 159.1 185 56.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 7.1e-37 157.9 122 73.8
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.2e-36 157.1 161 61.5
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-36 156.8 136 65.4
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.5e-34 150.2 162 60.5
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.9e-34 149.8 105 84.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 7.3e-34 147.9 160 54.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.6e-33 146.7 209 48.3
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.0e-32 142.1 163 55.2
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 5.3e-32 141.7 221 43.4
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 6.9e-32 141.4 163 55.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.2e-30 136.3 145 53.1
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 4.9e-30 135.2 145 52.4
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.4e-29 132.9 182 50.0
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 3.2e-29 132.5 180 51.7
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 5.4e-29 131.7 180 53.3
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.3e-27 127.1 155 52.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 8.7e-27 124.4 180 51.1
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.6e-26 121.7 155 51.6
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.3e-24 115.2 193 45.1
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.0e-23 113.2 150 50.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 4.5e-23 112.1 180 48.3
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-22 110.5 188 44.7
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.7e-22 110.2 94 62.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.7e-19 97.8 109 56.0
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.9e-18 96.7 94 63.8
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.7e-18 95.1 104 53.8
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 2.1e-17 93.2 91 63.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.4e-16 90.5 167 40.1
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.4e-16 90.5 107 48.6
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 5.3e-16 88.6 184 39.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 6.9e-16 88.2 57 87.7
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.6e-15 86.3 162 41.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 3.4e-15 85.9 57 86.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.4e-15 85.9 57 86.0
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.0e-14 84.3 140 45.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 8.4e-14 81.3 57 78.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.0e-11 72.8 157 38.9
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.0e-11 72.8 133 41.4
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.9e-10 70.1 52 71.2
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.6e-09 67.0 57 64.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.3e-09 65.1 57 64.9
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.4e-08 63.9 57 64.9
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.4e-08 63.9 57 61.4
BcaC02g09385 Brassica carinata HOM05D019496 ORTHO05D019976 4.1e-08 62.4 80 48.8
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.3e-06 57.4 57 57.9
C05p47770 Brassica napus HOM05D019496 ORTHO05D019976 1.7e-06 57.0 91 45.1
BolC8t48089H Brassica oleracea HOM05D019496 ORTHO05D019976 1.7e-06 57.0 91 45.1


User provided reference genes

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