Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 7.4e-80 300.4 148 100.0
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 2.8e-79 298.5 148 99.3
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 2.8e-79 298.5 148 99.3
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 3.7e-79 298.1 148 99.3
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 1.7e-76 289.3 146 96.6
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.2e-76 288.9 148 94.6
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 3.8e-76 288.1 146 95.9
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 3.8e-76 288.1 146 95.9
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 5.5e-75 284.3 148 91.9
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-74 282.3 148 90.5
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 4.7e-74 281.2 148 89.9
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 88.5
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.5e-72 276.2 146 88.4
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.5e-72 276.2 148 87.8
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 87.2
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 5.7e-72 274.2 148 89.9
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 5.7e-72 274.2 147 87.1
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 7.4e-72 273.9 148 86.5
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 9.7e-72 273.5 148 85.8
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 9.7e-72 273.5 148 87.2
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 1.7e-71 272.7 148 85.8
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 2.2e-71 272.3 148 86.5
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 2.2e-71 272.3 148 86.5
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 2.2e-71 272.3 148 85.8
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 85.8
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 87.2
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 85.1
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 84.5
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 85.1
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 85.1
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 84.5
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 4.8e-71 271.2 146 86.3
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 87.2
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 8.2e-71 270.4 148 86.5
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 8.2e-71 270.4 148 85.8
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 8.2e-71 270.4 148 85.8
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.1e-70 270.0 148 87.2
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.4e-70 269.6 148 83.1
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.8e-70 269.2 146 86.3
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 85.8
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 2.4e-70 268.9 148 85.1
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.4e-70 268.9 148 85.1
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 2.4e-70 268.9 146 84.2
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 3.1e-70 268.5 148 85.1
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 4.1e-70 268.1 148 85.1
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 4.1e-70 268.1 148 85.1
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 5.3e-70 267.7 148 85.8
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 84.5
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 85.1
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 83.8
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 86.5
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.8
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 83.8
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 84.5
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 85.8
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 2.0e-69 265.8 148 83.1
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 2.6e-69 265.4 146 87.0
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.6e-69 265.4 148 83.1
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 2.6e-69 265.4 148 83.1
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.5e-69 264.6 148 84.5
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 5.9e-69 264.2 147 81.6
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 84.5
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.3e-68 263.1 148 84.5
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.7e-68 262.7 148 83.8
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.9e-68 261.9 148 82.4
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 6.5e-68 260.8 148 82.4
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 8.5e-68 260.4 148 81.8
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 8.5e-68 260.4 148 81.8
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 1.1e-67 260.0 148 81.8
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.1e-67 260.0 148 82.4
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 1.4e-67 259.6 146 82.9
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.9e-67 259.2 148 83.1
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.2e-67 258.1 168 75.0
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 7.2e-67 257.3 146 80.8
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 7.2e-67 257.3 148 79.1
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 7.2e-67 257.3 147 78.9
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.6e-66 256.1 148 80.4
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 1.6e-66 256.1 148 80.4
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 2.1e-66 255.8 148 79.7
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.6e-66 255.0 139 86.3
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 8.0e-66 253.8 143 86.0
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 8.0e-66 253.8 146 80.1
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.3e-65 252.3 148 78.4
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.2e-65 251.1 146 79.5
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 8.8e-65 250.4 146 81.5
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 5.7e-64 247.7 158 74.1
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.2e-63 245.7 148 74.3
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.8e-63 245.4 148 77.0
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 2.4e-62 242.3 130 85.4
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 4.1e-62 241.5 129 87.6
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 9.1e-62 240.4 140 78.6
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.1e-59 233.4 198 60.1
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.1e-59 233.4 145 72.4
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.2e-59 231.9 135 78.5
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 7.2e-59 230.7 145 71.7
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.6e-58 228.4 123 87.0
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 8.0e-58 227.3 123 87.0
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 8.0e-58 227.3 123 87.0
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 8.0e-58 227.3 123 85.4
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.2e-56 223.4 123 83.7
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 1.2e-56 223.4 148 73.0
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 2.0e-56 222.6 130 82.3
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 4.4e-56 221.5 146 71.2
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.7e-56 220.3 123 84.6
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.7e-55 218.4 122 84.4
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 6.3e-55 217.6 146 70.5
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 4.1e-54 214.9 123 80.5
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.0e-53 212.6 130 76.2
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 1.3e-52 209.9 130 73.1
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.1e-51 206.8 126 75.4
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 1.9e-51 206.1 146 65.1
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 1.6e-50 203.0 121 76.9
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.3e-49 199.1 148 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 4.0e-49 198.4 145 64.8
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 4.8e-47 191.4 146 58.2
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.1e-46 190.3 119 84.0
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.2e-45 186.8 118 72.9
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 3.0e-41 172.2 113 72.6
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.3e-39 166.8 148 58.1
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 8.3e-39 164.1 148 56.8
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.8e-38 162.9 148 57.4
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 2.4e-38 162.5 143 54.5
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 7.8e-37 157.5 117 64.1
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.9e-33 144.1 84 78.6
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 2.6e-32 142.5 82 84.1
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.3e-31 140.2 89 74.2
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 8.6e-28 127.5 155 47.7
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.5e-24 116.7 86 64.0
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.7e-21 105.9 65 81.5
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 3.0e-20 102.4 58 82.8
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.8e-18 95.9 63 68.3
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.8e-18 95.9 128 45.3
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 2.8e-18 95.9 60 76.7
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.1e-17 94.0 65 69.2
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 8.9e-17 90.9 152 35.5
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.2e-16 90.5 139 34.5
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.4e-16 88.6 52 76.9
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 1.9e-14 83.2 46 87.0
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 2.1e-13 79.7 143 30.8
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 9.9e-08 60.8 77 44.2


User provided reference genes

Program Settings