Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 6.2e-137 490.7 236 100.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.6e-123 444.1 228 93.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 7.8e-116 420.6 236 88.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.3e-115 419.1 236 88.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.1e-114 416.8 254 82.7
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 8.4e-110 400.6 236 82.6
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.2e-109 398.7 236 82.2
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.7e-107 392.9 236 81.8
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.9e-107 391.7 232 81.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 6.6e-107 391.0 237 81.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-106 389.4 232 80.6
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 3.6e-105 385.2 236 79.2
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 4.8e-105 384.8 236 79.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 4.8e-105 384.8 236 79.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.2e-105 384.4 237 79.7
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-104 382.9 222 81.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 4.0e-104 381.7 233 79.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 9.0e-104 380.6 222 80.6
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.6e-103 379.0 236 78.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 5.1e-99 364.8 236 76.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.7e-99 364.0 236 75.4
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.5e-98 362.5 236 75.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-90 335.1 246 70.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 6.2e-89 331.3 218 71.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.7e-84 315.8 232 65.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.1e-80 303.9 220 64.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.1e-72 275.4 235 54.9
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.2e-71 273.9 200 61.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.5e-71 273.5 220 57.3
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 4.5e-71 271.9 204 56.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.3e-70 270.4 214 55.6
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.2e-70 269.6 196 59.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.9e-70 269.2 206 56.3
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.9e-70 269.2 195 59.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.1e-69 267.3 219 54.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.1e-69 267.3 215 58.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.2e-69 265.8 201 60.2
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.2e-69 264.6 229 55.0
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 7.2e-69 264.6 196 61.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 9.4e-69 264.2 211 56.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.2e-68 263.8 222 56.8
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.2e-68 263.8 228 53.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.1e-68 263.1 218 56.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 3.6e-68 262.3 201 59.2
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.6e-68 262.3 210 56.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.7e-68 261.9 211 58.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.7e-68 261.9 207 56.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 7.9e-68 261.2 209 54.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 3.0e-67 259.2 203 58.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 3.0e-67 259.2 231 52.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.0e-67 259.2 226 53.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.0e-67 259.2 214 55.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.1e-67 258.5 215 58.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 5.1e-67 258.5 235 52.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 8.8e-67 257.7 232 52.2
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.5e-66 256.9 213 57.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.5e-66 256.9 231 51.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 2.6e-66 256.1 232 51.3
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.3e-66 255.8 208 55.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.3e-66 255.8 201 56.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 9.7e-66 254.2 235 53.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 9.7e-66 254.2 223 51.6
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.8e-65 252.7 218 53.7
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.7e-65 252.3 229 51.1
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 4.8e-65 251.9 208 52.9
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.3e-65 251.5 235 51.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 6.3e-65 251.5 196 56.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.4e-64 249.6 221 52.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.1e-64 248.8 229 50.7
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.3e-64 248.4 212 55.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.3e-64 248.4 208 54.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 7.0e-64 248.1 210 53.3
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 7.0e-64 248.1 204 53.9
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 7.0e-64 248.1 205 53.7
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 9.1e-64 247.7 233 50.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.2e-63 247.3 218 53.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.6e-63 246.1 214 55.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.5e-63 245.7 232 50.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.5e-63 245.4 210 52.9
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.0e-62 244.2 215 51.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.7e-62 243.4 196 54.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.2e-61 239.2 232 49.6
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.2e-61 239.2 241 49.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 9.4e-61 237.7 220 50.0
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.2e-60 237.3 214 51.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.7e-60 235.3 208 53.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.4e-59 233.8 189 55.0
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.8e-59 233.4 192 55.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.0e-59 232.6 217 49.8
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-59 231.9 233 48.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 8.8e-59 231.1 196 53.1
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 8.8e-59 231.1 210 50.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-58 230.7 189 56.6
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 9.7e-58 227.6 201 51.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-57 227.3 225 44.9
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.7e-57 226.9 225 44.9
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.7e-57 225.7 225 44.4
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 8.2e-57 224.6 213 45.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.2e-57 224.6 210 49.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.4e-56 223.8 209 45.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.8e-56 223.4 175 59.4
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.0e-55 219.9 237 47.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.9e-55 218.4 189 54.0
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.0e-54 217.6 210 48.6
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.3e-54 217.2 167 53.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 5.0e-54 215.3 196 53.1
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-53 214.2 214 50.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 9.8e-50 201.1 216 50.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 9.8e-50 201.1 207 47.8
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.3e-49 200.7 180 50.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.8e-49 199.5 198 50.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-49 199.1 215 48.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 4.8e-49 198.7 182 47.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.2e-47 194.1 161 53.4
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.9e-47 191.8 175 47.4
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 7.7e-47 191.4 199 48.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.0e-46 191.0 201 46.3
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 7.2e-45 184.9 116 67.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.7e-44 183.0 207 43.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.8e-43 180.3 188 47.9
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 5.2e-43 178.7 210 41.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 9.8e-42 174.5 255 37.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-41 173.7 233 41.6
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-40 170.6 231 41.6
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-40 170.6 255 40.0
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.6e-39 167.2 215 39.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.0e-38 164.5 106 65.1
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.3e-37 159.5 198 42.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.2e-36 157.5 154 51.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 6.4e-33 145.2 124 50.0
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.6e-26 123.2 153 41.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.9e-25 119.0 107 53.3
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 6.4e-25 118.6 53 90.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.5e-23 112.8 92 48.9
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-21 107.1 67 71.6
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 9.8e-18 94.7 54 64.8
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-17 93.2 124 35.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.4e-16 90.9 58 62.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 4.6e-15 85.9 56 60.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 4.6e-15 85.9 68 51.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.5e-13 80.9 95 46.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 9.5e-13 78.2 147 32.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.1e-11 74.7 81 46.9
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.8e-11 73.9 52 61.5
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.1e-11 73.2 49 61.2
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.4e-10 69.3 99 40.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.6e-10 68.6 105 42.9
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.6e-10 68.6 51 58.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 9.9e-10 68.2 117 32.5
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.7e-07 60.1 84 40.5
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-06 57.4 33 60.6
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.9e-06 56.2 76 46.1


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