Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 6.4e-45 183.7 94 100.0
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 6.4e-45 183.7 94 100.0
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 6.4e-45 183.7 94 100.0
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 3.0e-42 174.9 94 95.7
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 3.0e-42 174.9 94 95.7
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.2e-37 158.7 94 87.2
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.4e-36 156.0 94 85.1
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 5.4e-36 154.1 94 84.0
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 9.3e-36 153.3 94 84.0
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-35 151.4 94 83.0
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 4.6e-35 151.0 94 83.0
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 4.6e-35 151.0 95 80.0
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 6.0e-35 150.6 95 85.3
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 6.0e-35 150.6 95 85.3
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 6.0e-35 150.6 94 80.9
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.0e-34 149.8 95 78.9
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.3e-34 148.7 95 77.9
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.5e-33 145.2 94 80.9
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 2.5e-33 145.2 95 83.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.6e-33 144.1 94 78.7
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.6e-33 144.1 92 78.3
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.3e-32 142.9 95 73.7
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.8e-31 139.0 94 75.5
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 9.0e-31 136.7 95 80.0
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 9.0e-31 136.7 95 80.0
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 9.0e-31 136.7 95 80.0
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.5e-30 136.0 92 76.1
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.0e-30 135.6 85 75.3
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 5.8e-30 134.0 96 75.0
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 5.8e-30 134.0 96 75.0
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.3e-29 132.9 96 72.9
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 1.7e-29 132.5 95 77.9
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 1.7e-29 132.5 95 77.9
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 4.9e-29 131.0 96 72.9
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 4.9e-29 131.0 96 72.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 2.1e-27 125.6 95 73.7
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 2.7e-27 125.2 78 82.1
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 2.7e-27 125.2 78 82.1
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 2.7e-27 125.2 78 82.1
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 2.5e-25 118.6 78 78.2
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 2.5e-25 118.6 78 78.2
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 3.3e-25 118.2 78 79.5
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 4.3e-25 117.9 78 78.2
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 4.3e-25 117.9 92 66.3
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 2.0e-22 109.0 94 64.9
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.4e-22 108.2 97 63.9
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.4e-22 108.2 97 63.9
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.0e-21 106.7 98 61.2
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.0e-21 106.7 97 58.8
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 1.3e-21 106.3 92 64.1
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.7e-21 105.9 94 60.6
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 106 61.3
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 2.2e-21 105.5 101 60.4
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 2.2e-21 105.5 96 60.4
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 2.9e-21 105.1 97 61.9
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.9e-21 105.1 97 60.8
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.8e-21 104.8 94 59.6
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 3.8e-21 104.8 94 59.6
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.8e-21 104.8 97 61.9
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 4.9e-21 104.4 87 67.8
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 6.5e-21 104.0 91 61.5
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.5e-21 104.0 94 66.0
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 6.5e-21 104.0 94 66.0
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 6.5e-21 104.0 108 59.3
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 6.5e-21 104.0 107 59.8
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.4e-20 102.8 94 58.5
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.4e-20 102.8 94 61.7
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.4e-20 102.8 94 64.9
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.9e-20 102.4 107 58.9
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 1.9e-20 102.4 97 58.8
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 4.2e-20 101.3 94 61.7
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 4.2e-20 101.3 104 57.7
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 5.5e-20 100.9 97 59.8
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 5.5e-20 100.9 107 57.9
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 7.1e-20 100.5 100 60.0
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 7.1e-20 100.5 106 59.4
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.1e-20 100.5 103 57.3
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 9.3e-20 100.1 108 52.8
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 9.3e-20 100.1 107 56.1
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 9.3e-20 100.1 107 57.9
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.2e-19 99.8 109 55.0
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.6e-19 99.4 104 57.7
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 1.6e-19 99.4 92 56.5
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.1e-19 99.0 101 57.4
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.5e-19 98.2 96 57.3
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.5e-19 98.2 96 58.3
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 3.5e-19 98.2 92 63.0
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.5e-19 98.2 94 58.5
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 4.6e-19 97.8 88 62.5
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 4.6e-19 97.8 106 56.6
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 4.6e-19 97.8 106 54.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 6.0e-19 97.4 97 56.7
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 7.9e-19 97.1 96 57.3
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.9e-19 97.1 101 58.4
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.0e-18 96.7 94 60.6
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.0e-18 96.7 107 57.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 1.3e-18 96.3 97 56.7
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 1.3e-18 96.3 94 59.6
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-18 96.3 97 56.7
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.3e-18 96.3 107 57.0
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.8e-18 95.9 104 55.8
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.3e-18 95.5 106 54.7
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 2.3e-18 95.5 97 54.6
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.3e-18 95.5 97 55.7
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 2.3e-18 95.5 94 56.4
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 3.0e-18 95.1 97 56.7
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 3.0e-18 95.1 102 55.9
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.0e-18 95.1 108 56.5
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.0e-18 95.1 97 54.6
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 3.0e-18 95.1 106 52.8
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 3.9e-18 94.7 97 55.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 3.9e-18 94.7 97 55.7
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.9e-18 94.7 97 54.6
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 5.1e-18 94.4 91 54.9
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 5.1e-18 94.4 97 56.7
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 8.7e-18 93.6 97 55.7
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 8.7e-18 93.6 90 56.7
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 1.1e-17 93.2 100 54.0
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.1e-17 93.2 92 55.4
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.1e-17 93.2 104 52.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.5e-17 92.8 97 55.7
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.5e-17 92.8 100 56.0
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.5e-17 92.8 104 53.8
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.9e-17 92.4 97 55.7
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.9e-17 92.4 97 55.7
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.9e-17 92.4 82 59.8
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 5.7e-17 90.9 102 54.9
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 5.7e-17 90.9 93 50.5
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 7.4e-17 90.5 97 53.6
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 7.4e-17 90.5 100 56.0
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 7.4e-17 90.5 100 55.0
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 9.7e-17 90.1 95 52.6
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 9.7e-17 90.1 95 53.7
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.6e-16 89.4 78 64.1
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 1.6e-16 89.4 84 59.5
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.2e-16 89.0 79 63.3
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.2e-16 89.0 93 54.8
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 3.7e-16 88.2 72 65.3
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 3.7e-16 88.2 92 54.3
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 3.7e-16 88.2 106 53.8
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 3.7e-16 88.2 82 56.1
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 4.8e-16 87.8 81 60.5
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 4.8e-16 87.8 97 52.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 4.8e-16 87.8 94 53.2
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 4.8e-16 87.8 103 52.4
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 6.3e-16 87.4 103 51.5
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 6.3e-16 87.4 103 52.4
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.1e-15 86.7 97 50.5
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 1.4e-15 86.3 94 54.3
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.4e-15 85.5 108 51.9
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.9e-15 84.0 86 51.2
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.9e-15 84.0 73 60.3
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.2e-14 83.2 94 51.1
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.2e-14 83.2 101 48.5
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.2e-14 83.2 93 57.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.0e-14 82.4 73 60.3
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 2.6e-14 82.0 101 52.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 2.6e-14 82.0 97 49.5
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.6e-14 82.0 86 51.2
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 5.9e-14 80.9 98 50.0
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 7.7e-14 80.5 94 52.1
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.0e-13 80.1 104 49.0
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.3e-13 79.7 105 48.6
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 2.2e-13 79.0 88 48.9
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 3.8e-13 78.2 94 48.9
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 3.8e-13 78.2 80 53.8
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 5.0e-13 77.8 98 52.0
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 6.5e-13 77.4 105 47.6
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.5e-13 77.4 86 47.7
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 6.5e-13 77.4 93 53.8
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 8.5e-13 77.0 87 50.6
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.1e-12 76.6 82 58.5
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 1.4e-12 76.3 93 52.7
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 9.4e-12 73.6 99 50.5
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.2e-11 73.2 75 53.3
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.0e-10 70.1 79 48.1
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 3.0e-10 68.6 83 49.4
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 3.0e-10 68.6 80 43.8
BraA07t30345Z Brassica rapa HOM05D003613 ORTHO05D004055 8.2e-08 60.5 40 72.5
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 2.4e-07 58.9 70 50.0
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 3.1e-07 58.5 70 50.0
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 4.1e-07 58.2 63 52.4
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 9.1e-07 57.0 84 44.0
C06p29730 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-06 56.6 38 71.1
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.2e-06 56.6 64 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 7.7e-06 53.9 47 55.3
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 7.7e-06 53.9 83 43.4


User provided reference genes

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