Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 4.0e-78 294.7 146 100.0
BcaB06g27242 Brassica carinata HOM05D005064 ORTHO05D006611 1.5e-32 143.3 71 95.8
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 3.2e-19 99.0 69 72.5
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 6.1e-10 68.2 43 74.4
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 6.1e-10 68.2 43 76.7
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 6.1e-10 68.2 43 76.7
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 6.1e-10 68.2 43 76.7
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 6.1e-10 68.2 43 76.7
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 8.0e-10 67.8 43 74.4
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 8.0e-10 67.8 43 74.4
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 8.0e-10 67.8 43 74.4
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 8.0e-10 67.8 43 74.4
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 8.0e-10 67.8 43 74.4
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 1.0e-09 67.4 43 72.1
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 1.4e-09 67.0 41 78.0
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 1.8e-09 66.6 43 72.1
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 4.0e-09 65.5 44 68.2
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 5.2e-09 65.1 43 72.1
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 6.7e-09 64.7 43 69.8
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 6.7e-09 64.7 43 69.8
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 6.7e-09 64.7 50 64.0
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 8.8e-09 64.3 43 72.1
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 8.8e-09 64.3 50 66.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 8.8e-09 64.3 50 64.0
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 1.2e-08 63.9 43 67.4
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 1.2e-08 63.9 41 73.2
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 1.2e-08 63.9 50 64.0
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 1.5e-08 63.5 43 69.8
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.5e-08 63.5 43 67.4
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 67.4
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 67.4
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 2.0e-08 63.2 45 66.7
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 67.4
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 65.1
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 2.0e-08 63.2 50 62.0
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 67.4
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 2.0e-08 63.2 50 62.0
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 2.0e-08 63.2 43 67.4
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 2.0e-08 63.2 50 62.0
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 2.6e-08 62.8 55 60.0
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 2.6e-08 62.8 50 60.0
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 67.4
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 65.1
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.6e-08 62.8 43 67.4
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.3e-08 62.4 43 67.4
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 3.3e-08 62.4 50 62.0
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 4.4e-08 62.0 43 65.1
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 4.4e-08 62.0 43 67.4
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 4.4e-08 62.0 43 65.1
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 4.4e-08 62.0 45 64.4
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 4.4e-08 62.0 43 65.1
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 5.7e-08 61.6 87 43.7
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 62.8
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 62.8
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 62.8
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 62.8
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 65.1
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 5.7e-08 61.6 43 65.1
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 7.5e-08 61.2 43 65.1
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 7.5e-08 61.2 43 62.8
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 7.5e-08 61.2 43 62.8
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 7.5e-08 61.2 43 65.1
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 7.5e-08 61.2 43 65.1
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 9.7e-08 60.8 50 58.0
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 9.7e-08 60.8 43 67.4
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 9.7e-08 60.8 45 64.4
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 1.3e-07 60.5 43 62.8
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 1.3e-07 60.5 44 59.1
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 1.3e-07 60.5 43 65.1
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 1.3e-07 60.5 45 62.2
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 1.3e-07 60.5 43 65.1
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.7e-07 60.1 43 62.8
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 2.2e-07 59.7 45 64.4
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 2.2e-07 59.7 45 60.0
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 2.8e-07 59.3 50 56.0
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 2.8e-07 59.3 43 62.8
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 2.8e-07 59.3 43 65.1
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 3.7e-07 58.9 43 60.5
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.7e-07 58.9 43 62.8
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.7e-07 58.9 43 62.8
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 3.7e-07 58.9 43 65.1
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 4.8e-07 58.5 43 62.8
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 6.3e-07 58.2 40 67.5
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 8.2e-07 57.8 45 55.6
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 8.2e-07 57.8 43 60.5
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 8.2e-07 57.8 43 62.8
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.4e-06 57.0 43 60.5
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.4e-06 57.0 43 60.5
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 1.4e-06 57.0 43 60.5
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 1.8e-06 56.6 43 60.5
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 1.8e-06 56.6 43 65.1
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 3.1e-06 55.8 43 58.1
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 3.1e-06 55.8 43 58.1
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 3.1e-06 55.8 43 58.1
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 3.1e-06 55.8 43 58.1
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 4.1e-06 55.5 43 55.8
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 5.3e-06 55.1 45 53.3
BolC5t32205H Brassica oleracea HOM05D003431 ORTHO05D032197 7.0e-06 54.7 66 47.0
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 9.1e-06 54.3 48 54.2


User provided reference genes

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