Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 1.8e-119 432.6 215 100.0
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 1.1e-52 210.7 143 79.7
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 1.1e-52 210.7 143 79.7
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 2.1e-51 206.5 143 77.6
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 2.1e-51 206.5 143 77.6
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 6.2e-51 204.9 144 78.5
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 3.1e-50 202.6 143 76.9
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 1.9e-44 183.3 145 71.0
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 9.8e-41 171.0 147 68.0
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 5.1e-37 158.7 99 84.8
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 8.4e-32 141.4 123 69.9
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 2.6e-25 119.8 100 70.0
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 2.2e-24 116.7 77 79.2
A07p09220 Brassica napus HOM05D000189 ORTHO05D000474 6.6e-21 105.1 61 80.3
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 3.1e-18 96.3 101 58.4
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 3.1e-18 96.3 101 58.4
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 9.0e-18 94.7 101 52.5
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 2.0e-17 93.6 101 57.4
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 9.9e-17 91.3 101 56.4
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 9.9e-17 91.3 101 56.4
C06p30710 Brassica napus HOM05D035926 ORTHO05D102918 8.4e-16 88.2 53 79.2
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 1.4e-15 87.4 101 54.5
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 4.2e-15 85.9 127 42.5
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 5.4e-15 85.5 84 54.8
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 5.4e-15 85.5 84 54.8
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 7.1e-15 85.1 103 54.4
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 7.1e-15 85.1 77 58.4
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 9.3e-15 84.7 101 53.5
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 1.6e-14 84.0 99 47.5
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 1.6e-14 84.0 80 57.5
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 2.7e-14 83.2 84 61.9
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 2.7e-14 83.2 102 52.9
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 2.7e-14 83.2 80 56.2
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 2.7e-14 83.2 80 53.8
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 4.6e-14 82.4 82 53.7
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.6e-14 82.4 77 57.1
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 4.6e-14 82.4 116 47.4
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 6.0e-14 82.0 77 57.1
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 7.9e-14 81.6 80 51.2
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.0e-13 81.3 84 52.4
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 1.0e-13 81.3 76 56.6
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 1.8e-13 80.5 78 55.1
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 2.3e-13 80.1 134 37.3
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 2.3e-13 80.1 102 46.1
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 3.0e-13 79.7 76 59.2
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 3.0e-13 79.7 76 55.3
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 5.1e-13 79.0 99 52.5
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 5.1e-13 79.0 75 53.3
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 5.1e-13 79.0 75 53.3
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 6.7e-13 78.6 101 52.5
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 6.7e-13 78.6 121 43.0
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 1.1e-12 77.8 78 51.3
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 1.1e-12 77.8 80 55.0
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 1.1e-12 77.8 80 51.2
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 1.5e-12 77.4 101 52.5
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 1.5e-12 77.4 101 52.5
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 1.9e-12 77.0 80 52.5
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 2.5e-12 76.6 84 48.8
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 5.6e-12 75.5 77 53.2
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 7.4e-12 75.1 81 51.9
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 9.6e-12 74.7 77 55.8
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 1.3e-11 74.3 111 44.1
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 1.3e-11 74.3 128 37.5
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 1.3e-11 74.3 87 44.8
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 1.6e-11 73.9 80 47.5
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.6e-11 73.9 76 50.0
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.6e-11 73.9 76 50.0
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 2.1e-11 73.6 81 50.6
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 2.1e-11 73.6 80 48.8
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 3.6e-11 72.8 76 48.7
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 3.6e-11 72.8 76 51.3
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 4.8e-11 72.4 80 46.2
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 6.2e-11 72.0 82 51.2
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 1.1e-10 71.2 116 43.1
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.1e-10 71.2 126 36.5
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 1.1e-10 71.2 90 47.8
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 1.1e-10 71.2 114 38.6
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 1.4e-10 70.9 117 43.6
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 2.4e-10 70.1 116 37.9
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 4.0e-10 69.3 77 49.4
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 5.3e-10 68.9 86 47.7
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 5.3e-10 68.9 79 48.1
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.3e-10 68.9 79 48.1
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 9.0e-10 68.2 83 44.6
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 9.0e-10 68.2 79 54.4
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 9.0e-10 68.2 93 47.3
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.2e-09 67.8 79 49.4
BolC9t53679H Brassica oleracea HOM05D035926 ORTHO05D041653 1.5e-09 67.4 37 83.8
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 1.5e-09 67.4 105 40.0
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 2.0e-09 67.0 79 49.4
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 4.5e-09 65.9 112 36.6
C04p34570 Brassica napus HOM05D035926 ORTHO05D041653 5.8e-09 65.5 37 81.1
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 5.8e-09 65.5 78 44.9
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 5.8e-09 65.5 83 53.0
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 5.8e-09 65.5 74 47.3
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 5.8e-09 65.5 114 37.7
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 7.6e-09 65.1 78 50.0
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.3e-08 64.3 126 34.1
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 1.7e-08 63.9 75 46.7
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 6.4e-08 62.0 78 46.2
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 1.1e-07 61.2 108 40.7
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 7.1e-07 58.5 118 38.1
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 9.3e-07 58.2 81 46.9
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 9.3e-07 58.2 84 45.2
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.2e-06 57.8 79 44.3
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.2e-06 57.8 84 44.0


User provided reference genes

Program Settings