Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 1.7e-136 489.6 285 100.0
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 3.3e-116 422.2 287 84.0
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 3.7e-96 355.5 287 70.7
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 2.4e-95 352.8 287 70.0
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 6.0e-94 348.2 288 70.5
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 3.8e-80 302.4 287 65.2
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 8.4e-80 301.2 287 64.8
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.0e-77 294.3 285 65.3
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.0e-77 294.3 285 65.3
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 1.3e-77 293.9 287 66.2
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 8.1e-75 284.6 286 63.6
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 8.1e-75 284.6 285 63.5
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.6e-70 270.4 285 54.7
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 7.1e-63 245.0 295 59.0
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 3.3e-60 236.1 305 57.7
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 4.5e-57 225.7 294 48.6
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 4.8e-51 205.7 211 59.7
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 5.1e-37 159.1 305 39.3
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.3e-36 156.4 320 39.4
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 1.7e-35 154.1 303 40.6
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 8.2e-35 151.8 215 48.4
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 1.4e-34 151.0 215 48.4
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.3e-34 149.1 306 44.4
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 2.1e-30 137.1 239 42.3
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.1e-30 135.6 300 41.7
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 1.1e-28 131.3 203 47.3
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.7e-27 127.5 318 36.8
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 6.3e-27 125.6 167 47.9
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 6.3e-27 125.6 324 38.9
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.3e-24 117.9 307 40.4
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 8.5e-24 115.2 127 61.4
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 1.4e-23 114.4 307 39.7
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 2.5e-23 113.6 305 41.3
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 4.7e-22 109.4 118 63.6
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 4.7e-22 109.4 303 38.9
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.0e-21 108.2 298 37.9
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.0e-21 108.2 227 37.4
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.1e-20 104.8 224 36.6
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 7.7e-17 92.0 305 32.8
BraA08t33657Z Brassica rapa HOM05D008819 ORTHO05D003197 1.0e-13 81.6 118 50.0
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.6e-12 77.0 316 32.6
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.3e-11 74.7 89 67.4
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.1e-10 69.7 305 32.5
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.7e-09 65.5 298 33.2
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.3e-08 64.7 237 35.0
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-08 64.3 295 32.2
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.0e-08 62.8 233 28.3
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.5e-07 61.2 232 28.4
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-07 60.8 298 32.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.5e-07 60.5 291 31.3
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.2e-07 59.7 216 29.6
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.2e-07 59.7 326 32.5
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 7.2e-07 58.9 314 25.2
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.2e-06 58.2 325 32.3
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.7e-06 57.0 324 32.4
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.6e-06 56.6 237 28.3
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 4.7e-06 56.2 183 39.3
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.1e-06 55.8 237 27.8
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 8.0e-06 55.5 326 32.2


User provided reference genes

Program Settings