Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.5e-190 668.7 354 100.0
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-181 639.8 354 96.0
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.1e-161 573.5 357 89.1
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 4.6e-144 515.0 360 81.1
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 9.3e-129 464.2 367 72.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.8e-119 433.3 365 68.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.8e-108 396.7 365 63.3
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.0e-106 391.0 365 63.0
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.8e-106 389.0 359 63.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 3.5e-104 382.5 366 60.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 5.9e-99 365.2 357 60.5
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.1e-97 360.9 362 59.7
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.5e-97 359.8 359 59.6
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 7.2e-97 358.2 241 80.5
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 7.2e-97 358.2 364 58.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 2.1e-96 356.7 359 59.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 4.6e-96 355.5 360 59.4
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.4e-95 354.0 361 59.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.9e-89 333.6 362 56.1
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.2e-81 305.8 361 50.7
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.4e-78 295.8 363 51.0
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.5e-57 224.9 386 39.1
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.6e-56 223.0 386 39.6
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 3.6e-56 223.0 386 39.4
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 8.0e-56 221.9 386 38.6
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 8.0e-56 221.9 386 39.6
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.0e-55 221.5 382 40.8
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.4e-54 216.5 390 37.2
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.7e-53 213.0 372 37.6
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.3e-53 212.2 391 36.6
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 8.3e-53 211.8 364 38.2
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.2e-51 208.0 379 39.6
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.7e-50 204.1 379 37.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.3e-50 203.8 371 40.2
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.5e-49 201.1 370 36.2
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 5.6e-49 199.1 339 38.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 5.2e-47 192.6 342 39.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 5.2e-47 192.6 368 38.3
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 8.9e-47 191.8 386 38.1
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.6e-46 190.3 368 36.4
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.4e-46 189.9 366 34.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.5e-46 188.7 338 36.7
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.7e-45 187.6 366 36.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.7e-45 187.6 359 36.5
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.7e-45 187.6 380 36.1
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.1e-44 184.9 341 38.7
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.4e-44 184.5 392 36.5
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.4e-44 183.7 361 34.3
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.7e-42 177.6 329 35.3
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 6.6e-42 175.6 388 34.0
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.3e-41 173.3 364 34.3
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.6e-40 171.0 360 35.3
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.7e-40 169.5 371 35.0
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 4.7e-40 169.5 392 32.4
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.4e-39 167.9 352 33.5
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 5.2e-39 166.0 370 34.6
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 5.2e-39 166.0 373 33.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.5e-38 164.5 373 33.2
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.5e-38 164.5 373 34.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.6e-38 163.7 392 32.7
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 7.5e-38 162.2 367 32.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.9e-37 160.2 373 32.7
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.7e-37 159.8 373 33.0
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.4e-36 157.9 378 33.6
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.9e-36 157.5 359 37.0
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 3.2e-36 156.8 368 32.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.2e-36 156.8 366 34.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 4.1e-36 156.4 402 33.3
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.4e-36 156.0 369 32.2
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.6e-35 154.5 373 33.0
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.6e-35 152.9 364 33.8
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 7.8e-35 152.1 350 34.9
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 7.8e-35 152.1 343 33.5
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 7.8e-35 152.1 375 32.8
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.0e-34 150.2 377 32.1
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.0e-34 150.2 347 34.0
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 3.0e-34 150.2 368 33.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.1e-33 148.3 363 32.8
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.9e-33 147.5 364 33.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.9e-33 147.5 363 35.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.3e-33 146.4 364 33.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.6e-33 146.0 332 35.5
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.1e-32 144.1 235 36.6
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.8e-31 141.0 391 29.9
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 5.2e-31 139.4 377 29.2
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.6e-30 137.1 426 28.4
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 5.8e-30 136.0 392 30.6
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.7e-29 134.4 336 29.5
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 8.3e-29 132.1 270 34.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.4e-28 131.3 299 30.8
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 4.1e-28 129.8 382 29.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.6e-27 127.9 378 29.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 6.0e-27 125.9 276 30.1
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.0e-26 125.2 303 31.0
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 3.0e-26 123.6 325 33.5
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 6.6e-26 122.5 283 32.2
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.5e-25 121.3 373 30.6
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.9e-25 120.9 350 29.7
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.9e-25 120.9 336 32.4
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.9e-25 120.9 394 26.6
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.2e-24 118.2 353 28.0
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.8e-24 117.1 321 31.2
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 4.7e-24 116.3 382 28.0
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.8e-23 114.4 236 39.0
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 5.2e-23 112.8 347 31.1
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 6.8e-23 112.5 361 29.1
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 8.9e-23 112.1 317 30.3
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.5e-22 111.3 364 28.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.0e-22 110.9 327 28.1
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 2.9e-21 107.1 159 42.1
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 5.4e-20 102.8 401 27.7
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 7.1e-20 102.4 158 44.9
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.2e-19 101.7 386 28.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 6.0e-19 99.4 290 30.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 8.7e-18 95.5 347 28.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.2e-16 91.7 164 37.8
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.1e-16 90.9 344 27.3
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-16 90.5 56 75.0
A07p16080 Brassica napus HOM05D005472 ORTHO05D005897 8.1e-16 89.0 51 92.2
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.4e-15 88.2 396 27.0
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 4.0e-15 86.7 391 26.3
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 5.3e-15 86.3 379 27.4
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.2e-14 85.1 309 27.2
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.8e-14 82.8 154 37.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.3e-13 81.6 362 27.9
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 2.2e-13 80.9 367 27.2
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 4.6e-11 73.2 362 27.1
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.7e-10 71.2 202 28.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.7e-10 71.2 309 24.3
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.7e-10 71.2 400 25.5
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 2.3e-10 70.9 97 41.2
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.1e-08 64.3 201 25.9
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.1e-08 64.3 352 25.3
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.8e-08 63.9 332 23.5
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.6e-08 63.5 330 26.7
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 8.1e-08 62.4 377 24.7
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 9.9e-06 55.5 232 30.2


User provided reference genes

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