Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 2.0e-56 222.2 117 100.0
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 2.5e-54 215.3 117 95.7
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 2.5e-54 215.3 117 95.7
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 2.5e-54 215.3 117 95.7
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 5.5e-54 214.2 117 94.9
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 5.5e-54 214.2 117 94.9
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 5.5e-54 214.2 117 94.9
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 7.2e-54 213.8 117 94.0
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 8.0e-53 210.3 117 93.2
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 5.2e-52 207.6 117 90.6
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 8.8e-52 206.8 117 89.7
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 2.0e-51 205.7 117 90.6
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 4.4e-51 204.5 117 89.7
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 7.5e-51 203.8 117 88.9
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 1.1e-49 199.9 115 89.6
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 1.4e-44 183.0 117 79.5
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.2e-32 143.3 96 75.0
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 6.1e-29 131.0 117 59.8
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 5.8e-27 124.4 114 59.6
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 9.8e-27 123.6 114 59.6
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 9.8e-27 123.6 101 62.4
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 2.9e-26 122.1 114 62.3
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 4.9e-26 121.3 114 61.4
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 6.4e-26 120.9 114 58.8
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 1.1e-25 120.2 114 61.4
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 1.4e-25 119.8 114 59.6
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.9e-25 119.4 114 58.8
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 1.9e-25 119.4 113 57.5
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 5.4e-25 117.9 114 57.9
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 7.0e-25 117.5 114 57.9
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 9.2e-25 117.1 114 57.0
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 1.2e-24 116.7 90 63.3
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 1.2e-24 116.7 114 56.1
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 1.2e-24 116.7 96 64.6
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 1.2e-24 116.7 89 66.3
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 2.0e-24 115.9 113 57.5
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 2.7e-24 115.5 114 57.0
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 2.7e-24 115.5 103 56.3
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 3.5e-24 115.2 115 56.5
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 4.6e-24 114.8 114 53.5
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 6.0e-24 114.4 115 56.5
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 7.8e-24 114.0 113 57.5
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 1.0e-23 113.6 87 64.4
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 2.3e-23 112.5 115 54.8
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 3.0e-23 112.1 114 54.4
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.0e-23 112.1 114 54.4
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 3.9e-23 111.7 114 55.3
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 6.6e-23 110.9 86 66.3
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 8.6e-23 110.5 113 54.9
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 1.1e-22 110.2 114 54.4
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 1.5e-22 109.8 114 51.8
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 1.5e-22 109.8 87 63.2
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 1.5e-22 109.8 111 53.2
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 1.9e-22 109.4 86 65.1
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 1.9e-22 109.4 113 54.0
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 2.5e-22 109.0 114 52.6
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 4.3e-22 108.2 114 51.8
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 5.6e-22 107.8 114 54.4
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 5.6e-22 107.8 114 54.4
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 7.3e-22 107.5 114 55.3
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 9.5e-22 107.1 101 52.5
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 2.1e-21 105.9 87 62.1
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 2.8e-21 105.5 87 60.9
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 3.6e-21 105.1 114 54.4
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 3.6e-21 105.1 97 58.8
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 4.7e-21 104.8 84 63.1
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 6.2e-21 104.4 110 52.7
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 8.0e-21 104.0 115 49.6
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 3.1e-20 102.1 86 60.5
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 3.1e-20 102.1 115 52.2
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 4.0e-20 101.7 85 61.2
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 4.0e-20 101.7 115 50.4
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 5.2e-20 101.3 87 58.6
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 5.2e-20 101.3 87 59.8
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 5.2e-20 101.3 114 51.8
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 6.8e-20 100.9 117 49.6
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 6.8e-20 100.9 86 59.3
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 8.9e-20 100.5 115 52.2
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 1.2e-19 100.1 86 59.3
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 1.5e-19 99.8 114 51.8
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 1.5e-19 99.8 115 51.3
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 2.6e-19 99.0 87 58.6
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 3.4e-19 98.6 115 50.4
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 3.4e-19 98.6 115 50.4
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 4.4e-19 98.2 88 58.0
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 5.8e-19 97.8 112 49.1
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 5.8e-19 97.8 84 58.3
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 7.5e-19 97.4 112 49.1
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 7.5e-19 97.4 111 50.5
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 9.8e-19 97.1 80 60.0
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 9.8e-19 97.1 113 50.4
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 1.3e-18 96.7 86 55.8
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 1.7e-18 96.3 84 58.3
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 1.7e-18 96.3 115 50.4
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 2.2e-18 95.9 87 57.5
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 4.9e-18 94.7 106 50.0
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 8.3e-18 94.0 87 51.7
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 4.6e-16 88.2 87 49.4
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 1.7e-15 86.3 95 50.5
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 4.3e-14 81.6 84 47.6
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 4.4e-11 71.6 84 41.7
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 2.7e-08 62.4 84 38.1
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 1.1e-06 57.0 72 44.4
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 1.1e-06 57.0 72 44.4
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 2.5e-06 55.8 88 33.0


User provided reference genes

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