Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 8.7e-105 383.6 193 100.0
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 2.6e-93 345.5 193 90.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.1e-91 340.1 194 91.2
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.7e-90 335.5 193 89.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.6e-87 326.2 195 87.7
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.1e-86 322.0 194 84.0
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 3.9e-81 305.1 194 80.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.3e-80 301.6 194 80.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.5e-77 293.1 193 79.8
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.5e-77 293.1 199 79.4
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.6e-77 292.4 188 80.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.6e-66 256.5 190 73.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 2.7e-66 255.8 145 89.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.0e-65 253.8 145 89.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.3e-65 252.7 184 71.2
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.5e-64 250.0 184 70.7
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-62 243.8 148 86.5
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 5.9e-61 238.0 182 72.0
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 5.9e-61 238.0 182 72.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.8e-57 226.5 187 66.8
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.9e-52 209.1 180 61.1
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 9.4e-51 204.1 184 58.7
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 4.7e-50 201.8 184 56.5
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 8.0e-50 201.1 180 59.4
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 8.0e-50 201.1 174 59.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 8.0e-50 201.1 181 59.1
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.8e-49 199.9 184 60.3
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.8e-49 199.9 181 56.9
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.3e-49 199.5 186 57.5
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.3e-49 199.5 186 57.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 8.8e-49 197.6 182 57.1
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.5e-48 196.8 180 58.9
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.5e-48 194.5 172 59.9
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 3.7e-47 192.2 183 55.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.8e-47 191.8 174 58.6
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.3e-47 191.0 174 58.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.1e-46 190.7 189 54.5
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.4e-46 190.3 181 54.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.8e-46 189.9 188 55.9
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.4e-46 189.5 164 62.8
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.1e-46 189.1 189 53.4
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 4.1e-46 188.7 184 56.0
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 7.0e-46 188.0 164 59.8
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 9.1e-46 187.6 184 54.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.2e-45 187.2 186 54.8
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.0e-45 186.4 167 58.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.7e-45 186.0 159 60.4
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 3.5e-45 185.7 182 55.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 3.5e-45 185.7 166 60.2
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.0e-44 184.1 188 54.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.0e-44 184.1 158 60.1
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.0e-44 184.1 180 56.1
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.3e-44 183.7 190 54.2
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.7e-44 183.3 162 56.8
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.2e-44 183.0 183 53.0
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.2e-44 183.0 158 60.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 3.8e-44 182.2 179 55.3
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.5e-43 180.3 167 57.5
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.9e-43 179.9 192 53.1
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 2.5e-43 179.5 166 57.8
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.5e-43 179.5 180 55.0
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 3.2e-43 179.1 157 58.0
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.2e-43 178.7 181 51.9
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 5.5e-43 178.3 146 63.7
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.2e-43 177.9 166 55.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.2e-43 177.9 166 55.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 7.2e-43 177.9 184 51.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.2e-42 177.2 149 63.8
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.6e-42 176.8 180 53.3
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.6e-42 176.8 187 54.0
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.7e-42 176.0 180 54.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 4.7e-42 175.3 180 54.4
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.8e-41 173.3 184 49.5
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-41 173.3 178 50.6
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.8e-41 173.3 183 54.6
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-41 173.3 187 52.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 4.0e-41 172.2 177 51.4
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 8.8e-41 171.0 176 52.3
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 8.8e-41 171.0 144 59.0
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.5e-40 170.2 158 57.6
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.5e-40 170.2 159 59.7
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.5e-40 170.2 189 52.4
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.0e-40 169.9 149 59.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.6e-40 169.5 181 50.3
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-40 169.1 178 52.2
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-40 169.1 178 52.2
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-40 169.1 178 52.2
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 7.5e-40 167.9 160 55.6
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 9.8e-40 167.5 138 65.2
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 9.8e-40 167.5 158 57.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.3e-39 167.2 180 51.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.7e-39 166.8 184 47.3
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.2e-39 166.4 175 49.7
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.7e-39 165.6 140 64.3
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-39 165.6 164 54.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.4e-38 162.9 192 49.0
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 4.1e-38 162.2 155 56.8
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.2e-37 160.6 182 52.2
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.3e-36 157.1 137 62.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.3e-36 157.1 146 58.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 2.3e-36 156.4 165 50.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.1e-35 154.1 163 50.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.5e-35 152.9 157 52.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 5.5e-35 151.8 264 39.8
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 3.6e-34 149.1 170 48.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.4e-33 147.1 154 50.0
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-33 146.7 198 42.9
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 5.7e-32 141.7 160 50.0
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 5.7e-32 141.7 133 54.9
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 9.8e-32 141.0 119 62.2
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 9.8e-32 141.0 144 53.5
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 4.6e-29 132.1 127 57.5
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 2.3e-28 129.8 148 48.0
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.9e-28 129.4 155 47.7
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.5e-27 127.1 182 40.1
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.0e-25 120.9 134 48.5
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.2e-23 113.2 104 56.7
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.7e-20 103.6 149 43.6
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 2.3e-20 103.2 104 53.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 3.9e-20 102.4 60 81.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 5.6e-19 98.6 119 47.1
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.3e-19 98.2 115 53.0
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 9.5e-19 97.8 188 35.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.2e-18 97.4 92 53.3
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 3.1e-17 92.8 171 37.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.7e-15 87.0 68 61.8
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.1e-13 80.1 78 52.6
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.5e-13 79.3 79 51.9
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 4.6e-13 79.0 74 59.5
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 7.6e-08 61.6 43 69.8
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 7.6e-08 61.6 43 69.8
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.3e-07 60.8 174 31.0
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.2e-07 60.1 84 41.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-06 56.6 84 38.1


User provided reference genes

Program Settings