Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 8.9e-131 470.3 245 100.0
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 3.1e-115 418.7 245 89.8
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 5.1e-110 401.4 243 87.7
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 1.4e-107 393.3 244 85.7
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.2e-106 390.2 244 84.4
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 1.2e-106 390.2 246 86.6
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 4.5e-106 388.3 246 86.2
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 1.3e-105 386.7 246 85.8
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 1.3e-105 386.7 246 85.8
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 1.2e-103 380.2 246 84.1
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 5.7e-101 371.3 228 84.6
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 1.4e-99 366.7 246 82.9
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 5.3e-99 364.8 246 82.5
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 1.2e-98 363.6 247 82.2
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 4.5e-98 361.7 245 80.4
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 7.6e-98 360.9 248 81.5
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 7.4e-93 344.4 234 80.3
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 7.7e-82 307.8 194 86.6
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 2.3e-78 296.2 246 67.9
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 5.0e-73 278.5 222 68.5
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 3.3e-69 265.8 237 65.0
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 8.6e-57 224.6 242 55.8
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 4.2e-56 222.2 246 52.8
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 4.7e-55 218.8 238 54.6
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 3.0e-54 216.1 238 55.0
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 3.0e-54 216.1 245 57.1
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 4.0e-54 215.7 219 58.4
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.6e-53 213.0 218 56.4
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 1.7e-52 210.3 227 55.1
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 2.2e-52 209.9 249 51.0
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 2.2e-52 209.9 239 52.3
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.8e-52 209.5 238 54.2
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 4.9e-52 208.8 240 52.5
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 4.9e-52 208.8 246 52.0
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 6.3e-52 208.4 244 50.0
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 6.3e-52 208.4 238 53.8
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 8.3e-52 208.0 240 52.9
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 8.3e-52 208.0 242 52.5
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 1.4e-51 207.2 239 52.3
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.4e-51 206.5 238 53.8
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 2.4e-51 206.5 246 50.8
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 5.4e-51 205.3 246 53.7
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.6e-50 203.8 239 51.0
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.0e-50 203.4 239 51.9
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 3.5e-50 202.6 239 50.6
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 3.5e-50 202.6 243 51.0
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.5e-50 202.2 239 51.0
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 5.9e-50 201.8 217 54.4
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 5.9e-50 201.8 247 51.4
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 5.9e-50 201.8 236 53.0
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 1.0e-49 201.1 238 51.3
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 1.0e-49 201.1 243 52.3
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.0e-49 201.1 219 55.3
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 1.3e-49 200.7 216 54.2
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.7e-49 200.3 239 49.8
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 3.8e-49 199.1 211 54.0
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 8.6e-49 198.0 246 50.4
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.1e-48 197.6 228 53.9
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.5e-48 196.4 237 50.6
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 4.3e-48 195.7 231 50.6
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 9.5e-48 194.5 241 51.5
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 9.5e-48 194.5 242 53.3
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 1.6e-47 193.7 249 48.6
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.6e-47 193.7 216 53.7
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.6e-47 193.7 238 48.7
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.6e-47 192.6 221 55.2
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 3.6e-47 192.6 232 48.7
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 4.7e-47 192.2 240 48.8
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 6.1e-47 191.8 242 50.8
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 6.1e-47 191.8 214 54.7
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.4e-46 190.7 242 47.9
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 1.8e-46 190.3 241 49.8
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 2.3e-46 189.9 237 49.8
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 6.8e-46 188.3 248 48.0
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 1.2e-45 187.6 210 54.3
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.2e-45 187.6 241 50.6
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 4.4e-45 185.7 250 48.0
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 7.5e-45 184.9 240 47.9
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 2.2e-44 183.3 208 51.9
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 2.9e-44 183.0 238 48.3
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.9e-44 183.0 249 48.6
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 6.4e-44 181.8 237 48.5
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 6.4e-44 181.8 241 49.0
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.4e-43 180.6 203 50.2
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 1.8e-43 180.3 240 48.3
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 1.8e-43 180.3 230 50.4
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.8e-43 180.3 233 44.6
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 3.2e-43 179.5 255 47.8
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 3.2e-43 179.5 235 48.5
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 3.2e-43 179.5 194 52.6
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 1.6e-42 177.2 213 49.8
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 1.6e-42 177.2 269 45.4
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 2.7e-42 176.4 231 48.5
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 3.5e-42 176.0 245 47.8
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 5.9e-42 175.3 228 48.2
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 1.5e-40 170.6 241 42.7
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 2.5e-40 169.9 211 48.8
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 2.5e-40 169.9 188 54.8
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 4.3e-40 169.1 245 43.3
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 7.3e-40 168.3 232 45.3
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 1.2e-39 167.5 215 47.9
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 1.2e-39 167.5 208 52.9
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 6.2e-39 165.2 238 46.6
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 6.2e-39 165.2 238 46.6
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.1e-38 164.5 249 42.2
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 1.1e-38 164.5 243 44.9
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 7.5e-37 158.3 203 49.3
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 9.8e-37 157.9 283 40.6
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 1.3e-36 157.5 212 48.1
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 2.9e-36 156.4 218 46.3
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 6.4e-36 155.2 244 44.7
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 6.4e-36 155.2 246 42.3
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.1e-35 154.5 215 44.7
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 1.1e-35 154.5 221 47.1
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.0e-34 150.2 243 41.2
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 1.7e-33 147.1 280 40.0
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 5.0e-33 145.6 214 43.0
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 1.4e-30 137.5 206 43.2
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 3.1e-30 136.3 188 44.7
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.9e-28 129.8 177 46.9
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 8.9e-22 108.2 243 39.1
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 4.4e-21 105.9 222 36.9
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 2.2e-20 103.6 149 45.0
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 1.1e-16 91.3 234 37.6
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 2.1e-15 87.0 104 51.0
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 1.7e-09 67.4 134 38.1
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 3.9e-09 66.2 117 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3977 Anthoceros agrestis HOM05D024008 ORTHO05D000523 1.4e-06 57.8 170 28.8


User provided reference genes

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