Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-108 395.6 203 100.0
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 4.4e-99 364.8 200 94.5
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 4.4e-99 364.8 200 94.5
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 4.4e-99 364.8 200 94.5
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-98 362.1 200 94.0
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-98 362.1 200 94.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.1e-89 333.6 203 89.7
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.0e-88 329.3 203 88.2
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-88 328.6 202 87.1
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.5e-88 328.6 202 87.1
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.3e-87 326.6 206 87.9
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.9e-87 325.1 201 87.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-86 323.6 202 86.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-86 323.6 202 86.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.1e-86 323.6 202 86.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.2e-85 320.1 206 85.0
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-82 308.9 202 84.2
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.7e-82 308.5 205 83.9
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.9e-82 308.1 205 83.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 6.4e-82 307.8 191 85.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-81 306.2 205 83.4
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-81 306.2 205 83.4
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-81 306.2 205 83.4
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.2e-81 305.4 207 83.1
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 5.4e-81 304.7 205 82.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.8e-51 204.9 210 57.6
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.1e-48 196.4 212 55.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 5.5e-41 171.8 212 52.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.7e-40 169.5 210 50.5
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.5e-38 163.7 204 51.0
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.5e-38 162.9 203 49.8
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.6e-37 160.2 208 51.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-37 157.9 205 49.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.1e-37 157.9 205 49.3
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.8e-36 156.8 212 46.7
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.4e-36 156.4 215 47.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.4e-36 156.4 182 48.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.1e-36 156.0 193 51.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 4.0e-36 155.6 210 48.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.3e-36 155.2 204 46.1
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-36 154.8 205 48.8
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 9.0e-36 154.5 209 47.4
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.2e-35 154.1 218 45.9
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.5e-35 153.7 177 52.5
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.5e-35 153.7 194 47.9
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.4e-35 152.5 208 48.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 3.4e-35 152.5 225 48.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.5e-35 152.1 172 58.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.5e-35 152.1 205 50.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 7.6e-35 151.4 199 47.2
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.0e-34 151.0 199 48.2
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.3e-34 150.6 198 48.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.3e-34 150.6 190 51.1
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.7e-34 150.2 202 46.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.7e-34 150.2 199 48.2
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.7e-34 150.2 198 48.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.9e-34 149.4 233 42.9
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.8e-34 149.1 200 47.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.1e-33 147.5 221 45.2
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.1e-33 147.5 229 42.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.9e-33 146.7 218 45.0
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.9e-33 146.7 203 48.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 5.5e-33 145.2 203 45.3
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.1e-33 144.8 198 46.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.1e-33 144.8 214 44.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 7.1e-33 144.8 229 42.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 218 44.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.6e-32 143.7 208 45.2
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-32 143.3 209 45.5
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-32 143.3 209 45.5
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.7e-32 142.9 211 47.4
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 6.0e-32 141.7 189 47.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.9e-32 141.4 212 43.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-31 141.0 208 44.2
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-31 141.0 208 44.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.0e-31 141.0 222 43.7
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.3e-31 140.6 202 43.6
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.8e-31 140.2 214 44.4
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.9e-31 139.0 218 44.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 5.1e-31 138.7 202 43.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.1e-31 138.7 204 42.2
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 6.7e-31 138.3 213 44.6
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-30 137.5 232 45.3
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-30 137.1 190 46.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.5e-30 136.3 220 44.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.3e-30 136.0 203 42.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.3e-30 136.0 204 46.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.3e-30 136.0 221 43.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.3e-30 136.0 209 43.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 4.3e-30 135.6 189 46.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.3e-30 135.6 205 45.4
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.7e-30 135.2 223 43.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.6e-30 134.4 178 44.4
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-29 133.7 206 43.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.8e-29 132.9 208 43.3
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 6.3e-29 131.7 225 41.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.2e-29 131.3 204 42.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 5.3e-28 128.6 205 40.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.9e-28 128.3 216 43.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.2e-27 127.5 221 40.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.2e-27 127.5 227 39.6
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.5e-27 127.1 222 41.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.5e-27 125.6 249 38.6
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.9e-27 125.2 209 43.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 7.6e-27 124.8 202 40.6
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.0e-26 124.4 221 39.4
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.0e-26 124.4 222 40.5
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.3e-26 124.0 223 39.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-26 123.6 175 45.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.7e-26 123.6 205 39.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.9e-26 122.9 212 42.5
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.9e-26 122.9 202 42.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 5.0e-26 122.1 187 43.9
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.4e-26 121.3 172 47.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 8.4e-26 121.3 169 43.2
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-25 120.2 173 47.4
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.2e-25 119.4 207 38.6
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 4.2e-25 119.0 196 39.3
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.2e-25 119.0 241 42.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 5.5e-25 118.6 184 42.4
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 7.2e-25 118.2 143 52.4
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 9.3e-25 117.9 200 39.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.5e-24 115.9 203 40.4
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.0e-23 114.4 191 43.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-23 113.6 191 41.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 5.1e-23 112.1 252 36.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 8.7e-23 111.3 186 44.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.7e-23 111.3 174 40.2
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.9e-22 110.2 172 41.3
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.9e-22 110.2 188 39.4
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.5e-22 109.8 188 41.5
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 5.7e-22 108.6 184 37.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-21 107.5 161 41.6
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.2e-21 106.7 195 35.9
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.8e-21 106.3 236 38.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 4.8e-21 105.5 254 34.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 5.3e-20 102.1 170 37.1
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.5e-19 100.5 171 39.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.0e-19 100.1 207 37.7
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 7.7e-19 98.2 149 44.3
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.5e-18 95.1 117 50.4
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 8.5e-18 94.7 194 37.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 7.2e-17 91.7 211 36.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.9e-16 88.2 174 37.4
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.4e-15 87.4 199 33.2
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-15 86.7 168 39.3
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-15 86.7 168 39.3
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.9e-15 85.9 168 39.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-15 85.9 168 39.3
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 5.1e-15 85.5 168 38.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.8e-15 84.7 112 50.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-14 84.0 193 34.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.3e-13 80.9 198 32.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-13 80.5 206 33.0
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.4e-12 77.4 170 37.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.8e-12 77.0 252 29.8
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 6.9e-12 75.1 177 35.0
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 6.9e-12 75.1 196 33.7
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.5e-11 73.9 101 45.5
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.9e-11 72.0 198 33.3
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.9e-11 72.0 196 33.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 5.9e-11 72.0 135 37.8
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 7.7e-11 71.6 166 33.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.2e-10 70.1 172 33.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.2e-09 66.2 133 32.3
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.1e-08 63.5 105 40.0
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.7e-08 63.2 192 29.2
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.4e-06 55.8 82 41.5
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.7e-06 55.5 96 36.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 9.7e-06 54.7 78 50.0


User provided reference genes

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