Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14195 Brassica carinata HOM05D004912 ORTHO05D006144 8.7e-205 716.8 387 100.0
A07p14290 Brassica napus HOM05D004912 ORTHO05D006144 4.5e-153 545.0 387 78.8
BraA07t29186Z Brassica rapa HOM05D004912 ORTHO05D006144 4.5e-153 545.0 387 78.8
C07p21010 Brassica napus HOM05D004912 ORTHO05D006144 5.5e-151 538.1 386 77.5
BolC7t42633H Brassica oleracea HOM05D004912 ORTHO05D006144 7.2e-151 537.7 386 77.7
BcaC06g34978 Brassica carinata HOM05D004912 ORTHO05D006144 9.4e-151 537.3 386 77.7
Sp1g20090 Schrenkiella parvula HOM05D004912 ORTHO05D006144 1.5e-143 513.5 397 73.8
CARHR022970 Cardamine hirsuta HOM05D004912 ORTHO05D006144 3.5e-121 439.1 392 66.3
Carub.0001s2211 Capsella rubella HOM05D004912 ORTHO05D006144 3.0e-112 409.5 400 62.0
AT1G22600 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 1.3e-107 394.0 399 61.2
AL1G36130 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 4.0e-101 372.5 387 57.6
Thhalv10008247m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 5.3e-93 345.5 391 54.5
Aa31LG4G8550 Aethionema arabicum HOM05D004912 ORTHO05D006144 7.4e-79 298.5 440 45.9
Carub.0002s1888 Capsella rubella HOM05D004912 ORTHO05D006144 3.5e-73 279.6 473 41.6
Thhalv10018523m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 5.3e-69 265.8 472 40.9
Sp5g27160 Schrenkiella parvula HOM05D004912 ORTHO05D006144 8.4e-67 258.5 478 39.7
A02p17660 Brassica napus HOM05D004912 ORTHO05D006144 3.2e-66 256.5 476 40.3
BraA02t06813Z Brassica rapa HOM05D004912 ORTHO05D006144 3.2e-66 256.5 476 40.3
BcaC03g15331 Brassica carinata HOM05D004912 ORTHO05D006144 6.0e-65 252.3 476 39.1
C02p29360 Brassica napus HOM05D004912 ORTHO05D006144 6.0e-65 252.3 476 39.1
BolC2t08987H Brassica oleracea HOM05D004912 ORTHO05D006144 6.0e-65 252.3 476 39.1
AT1G72100 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 9.7e-63 245.0 497 38.4
AL2G31720 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 1.3e-62 244.6 485 38.6
CARHR064910 Cardamine hirsuta HOM05D004912 ORTHO05D006144 2.0e-60 237.3 494 37.0
BcaB05g24704 Brassica carinata HOM05D004912 ORTHO05D006144 1.3e-59 234.6 454 37.9
THA.LOC104800129 Tarenaya hassleriana HOM05D004912 ORTHO05D006144 5.1e-56 222.6 513 32.7
Manes.18G104400 Manihot esculenta HOM05D004912 ORTHO05D006144 3.4e-52 209.9 435 35.4
Lj3g0019671 Lotus japonicus HOM05D004912 ORTHO05D006144 9.4e-50 201.8 403 35.5
arahy.Tifrunner.gnm1.ann1.NID8M3 Arachis hypogaea HOM05D004912 ORTHO05D006144 2.1e-49 200.7 408 36.8
arahy.Tifrunner.gnm1.ann1.SX2JAI Arachis hypogaea HOM05D004912 ORTHO05D006144 6.1e-49 199.1 442 34.4
COL.COLO4_05030 Corchorus olitorius HOM05D004912 ORTHO05D006144 2.3e-48 197.2 418 37.1
Glyma.12G001600 Glycine max HOM05D004912 ORTHO05D006144 8.8e-48 195.3 379 34.8
Dinv41750 Davidia involucrata HOM05D004912 ORTHO05D006144 9.7e-47 191.8 478 34.5
arahy.Tifrunner.gnm1.ann1.Z6QD6J Arachis hypogaea HOM05D004912 ORTHO05D006144 1.3e-46 191.4 406 35.2
arahy.Tifrunner.gnm1.ann1.9DDU7S Arachis hypogaea HOM05D004912 ORTHO05D006144 2.4e-45 187.2 407 33.2
QL02p026125 Quercus lobata HOM05D004912 ORTHO05D006144 1.5e-44 184.5 488 30.9
VMungo1127G0246 Vigna mungo HOM05D004912 ORTHO05D006144 3.5e-44 183.3 404 34.2
Aa31LG7G6480 Aethionema arabicum HOM05D004912 ORTHO05D006144 1.0e-43 181.8 232 49.6
Ca_27514_v3 Cicer arietinum L. HOM05D004912 ORTHO05D006144 1.0e-43 181.8 406 35.0
Gohir.D13G123600 Gossypium hirsutum HOM05D004912 ORTHO05D006144 3.8e-43 179.9 492 30.5
Eucgr.F04115 Eucalyptus grandis HOM05D004912 ORTHO05D006144 6.5e-43 179.1 461 32.3
Lalb_Chr01g0000121 Lupinus albus HOM05D004912 ORTHO05D006144 8.5e-43 178.7 415 33.7
EL10Ac1g00125 Beta vulgaris HOM05D004912 ORTHO05D006144 2.1e-41 174.1 421 34.9
Cfa012942 Carpinus fangiana HOM05D004912 ORTHO05D006144 2.7e-41 173.7 493 30.2
Glyma.08G239400 Glycine max HOM05D004912 ORTHO05D006144 1.8e-40 171.0 389 33.7
Oeu051787.1 Olea europaea HOM05D004912 ORTHO05D006144 2.3e-40 170.6 401 36.9
Phvul.011G001700 Phaseolus vulgaris HOM05D004912 ORTHO05D006144 8.8e-40 168.7 382 33.5
Gohir.A13G119900 Gossypium hirsutum HOM05D004912 ORTHO05D006144 2.0e-39 167.5 505 29.5
Gohir.D05G275200 Gossypium hirsutum HOM05D004912 ORTHO05D006144 2.0e-39 167.5 439 34.2
ClCG08G000690 Citrullus lanatus HOM05D004912 ORTHO05D006144 4.4e-39 166.4 408 33.8
Manes.02G197100 Manihot esculenta HOM05D004912 ORTHO05D006144 5.7e-39 166.0 489 30.7
Ciclev10001073m.g Citrus clementina HOM05D004912 ORTHO05D006144 1.3e-38 164.9 468 30.8
Ah.05g178460 Amaranthus hybridus HOM05D004912 ORTHO05D006144 2.2e-38 164.1 441 32.7
Gorai.013G138700 Gossypium raimondii HOM05D004912 ORTHO05D006144 4.8e-38 162.9 495 29.3
Actinidia01557 Actinidia chinensis HOM05D004912 ORTHO05D006144 1.1e-37 161.8 495 29.7
CANSAT25G2909 Cannabis sativa HOM05D004912 ORTHO05D006144 3.1e-37 160.2 457 32.4
Lsat_1_v5_gn_7_21041 Lactuca sativa HOM05D004912 ORTHO05D006144 7.0e-37 159.1 466 27.5
Medtr4g033230 Medicago truncatula HOM05D004912 ORTHO05D006144 7.0e-37 159.1 445 31.7
Medtr4g033265 Medicago truncatula HOM05D004912 ORTHO05D006144 7.0e-37 159.1 445 31.7
Atru.chr13.2352 Acer truncatum HOM05D004912 ORTHO05D006144 9.1e-37 158.7 448 31.2
ClCG11G008550 Citrullus lanatus HOM05D004912 ORTHO05D006144 9.1e-37 158.7 427 33.5
HanXRQChr09g0260131 Helianthus annuus HOM05D004912 ORTHO05D006144 1.6e-36 157.9 470 29.6
Haze_21297 Corylus avellana HOM05D004912 ORTHO05D006144 1.3e-35 154.8 239 40.2
AUR62004613 Chenopodium quinoa HOM05D004912 ORTHO05D006144 1.5e-34 151.4 438 33.1
Hund27105 Selenicereus undatus HOM05D004912 ORTHO05D006144 1.5e-34 151.4 448 28.8
Sabra13G0093000 Salix brachista HOM05D004912 ORTHO05D006144 4.2e-34 149.8 238 40.3
CDE06G1282 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 5.5e-34 149.4 446 28.7
Cpa.g.sc66.6 Carica papaya HOM05D004912 ORTHO05D006144 3.6e-33 146.7 208 42.3
CiPaw.08G002400 Carya illinoinensis HOM05D004912 ORTHO05D006144 4.7e-33 146.4 500 29.6
ECA232G1825 Erigeron canadensis HOM05D004912 ORTHO05D006144 6.1e-33 146.0 468 26.7
TWI23G1256 Tripterygium wilfordii HOM05D004912 ORTHO05D006144 1.0e-32 145.2 188 45.2
Nn5g27542 Nelumbo nucifera HOM05D004912 ORTHO05D006144 1.4e-32 144.8 541 28.7
AUR62022650 Chenopodium quinoa HOM05D004912 ORTHO05D006144 4.0e-32 143.3 462 30.3
Peaxi162Scf00154g00016 Petunia axillaris HOM05D004912 ORTHO05D006144 4.0e-32 143.3 468 28.8
PGR102G1759 Punica granatum HOM05D004912 ORTHO05D006144 4.0e-32 143.3 504 28.0
MELO3C022195.2 Cucumis melo HOM05D004912 ORTHO05D006144 5.2e-32 142.9 453 32.0
Migut.C01310 Erythranthe guttata HOM05D004912 ORTHO05D006144 8.8e-32 142.1 260 35.4
Sopen11g011640 Solanum pennellii HOM05D004912 ORTHO05D006144 1.5e-31 141.4 408 30.6
Lj4A484T8 Lonicera japonica HOM05D004912 ORTHO05D006144 2.0e-31 141.0 303 35.6
GSVIVG01001769001 Vitis vinifera HOM05D004912 ORTHO05D006144 2.0e-31 141.0 366 31.4
PGSC0003DMG400031411 Solanum tuberosum HOM05D004912 ORTHO05D006144 2.6e-31 140.6 401 31.4
Cc10_g10040 Coffea canephora HOM05D004912 ORTHO05D006144 3.4e-31 140.2 430 29.3
Prupe.1G554000 Prunus persica HOM05D004912 ORTHO05D006144 4.4e-31 139.8 473 29.0
Solyc11g022530.3 Solanum lycopersicum HOM05D004912 ORTHO05D006144 1.3e-30 138.3 408 31.1
PGSC0003DMG400031323 Solanum tuberosum HOM05D004912 ORTHO05D006144 4.8e-30 136.3 440 27.7
Oeu059194.1 Olea europaea HOM05D004912 ORTHO05D006144 1.1e-29 135.2 403 31.0
SGA_v2.0_scaffold118G32511 Striga asiatica HOM05D004912 ORTHO05D006144 2.4e-29 134.0 476 29.0
SalBow7G4664 Salvia bowleyana HOM05D004912 ORTHO05D006144 7.0e-29 132.5 426 28.9
unitig_748.g7733 Utricularia gibba HOM05D004912 ORTHO05D006144 7.0e-29 132.5 386 29.5
CsaV3_5G040180 Cucumis sativus L. HOM05D004912 ORTHO05D006144 1.2e-28 131.7 450 30.7
Nitab4.5_0006163g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 1.6e-28 131.3 471 27.4
Nitab4.5_0007332g0020 Nicotiana tabacum HOM05D004912 ORTHO05D006144 1.6e-28 131.3 208 39.9
RcHm_v2.0_Chr7g0227991 Rosa chinensis HOM05D004912 ORTHO05D006144 1.6e-28 131.3 198 40.9
Sed0022690 Sechium edule HOM05D004912 ORTHO05D006144 1.6e-28 131.3 454 28.9
Nitab4.5_0005750g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 3.5e-28 130.2 476 27.1
TAR376G1051 Trochodendron aralioides HOM05D004912 ORTHO05D006144 5.9e-28 129.4 194 41.8
Nitab4.5_0001378g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 7.7e-28 129.0 198 41.4
Peaxi162Scf00798g00322 Petunia axillaris HOM05D004912 ORTHO05D006144 7.7e-28 129.0 474 26.6
FAN04G2666 Fragaria x ananassa HOM05D004912 ORTHO05D006144 2.9e-27 127.1 201 37.3
Sopen06g023560 Solanum pennellii HOM05D004912 ORTHO05D006144 2.9e-27 127.1 450 25.1
TPR.G312 Trifolium pratense HOM05D004912 ORTHO05D006144 3.8e-27 126.7 320 30.9
MBI17_g01791_MAGBIO Magnolia biondii HOM05D004912 ORTHO05D006144 5.0e-27 126.3 258 36.4
FvH4_5g31970 Fragaria vesca HOM05D004912 ORTHO05D006144 6.5e-27 125.9 196 39.3
Psat7g146280 Pisum sativum HOM05D004912 ORTHO05D006144 6.5e-27 125.9 410 30.0
TAR628G1727 Trochodendron aralioides HOM05D004912 ORTHO05D006144 6.5e-27 125.9 394 27.7
HanXRQChr11g0326311 Helianthus annuus HOM05D004912 ORTHO05D006144 2.5e-26 124.0 366 27.6
MD15G1407700 Malus domestica HOM05D004912 ORTHO05D006144 2.5e-26 124.0 481 27.9
FAN18G2258 Fragaria x ananassa HOM05D004912 ORTHO05D006144 4.2e-26 123.2 196 38.8
GSVIVG01001772001 Vitis vinifera HOM05D004912 ORTHO05D006144 7.2e-26 122.5 291 32.0
Rhsim12G0007100 Rhododendron simsii HOM05D004912 ORTHO05D006144 1.2e-25 121.7 341 28.4
Solyc06g065050.2 Solanum lycopersicum HOM05D004912 ORTHO05D006144 2.7e-25 120.6 446 26.2
unitig_32.g11185 Utricularia gibba HOM05D004912 ORTHO05D006144 4.7e-25 119.8 389 29.3
CSS0047311 Camellia sinensis var. sinensis HOM05D004912 ORTHO05D006144 2.3e-24 117.5 129 48.1
DCAR_024339 Daucus carota HOM05D004912 ORTHO05D006144 1.5e-23 114.8 317 28.7
CAN.G308.42 Capsicum annuum HOM05D004912 ORTHO05D006144 2.0e-23 114.4 464 26.7
Zm00001eb422690 Zea mays HOM05D004912 ORTHO05D006144 3.4e-23 113.6 216 35.6
Aqoxy6G00063 Aquilegia oxysepala HOM05D004912 ORTHO05D006144 7.5e-23 112.5 202 35.1
Rhsim11G0053200 Rhododendron simsii HOM05D004912 ORTHO05D006144 1.7e-22 111.3 305 29.5
CAN.G635.17 Capsicum annuum HOM05D004912 ORTHO05D006144 1.4e-21 108.2 135 40.7
PGSC0003DMG400031324 Solanum tuberosum HOM05D004912 ORTHO05D006144 2.7e-20 104.0 206 35.9
Lalb_Chr19g0140481 Lupinus albus HOM05D004912 ORTHO05D006144 3.5e-20 103.6 371 27.2
Sc01g0001930 Simmondsia chinensis HOM05D004912 ORTHO05D006144 3.5e-20 103.6 325 30.2
HPP92_005696 Vanilla planifolia HOM05D004912 ORTHO05D006144 5.9e-20 102.8 426 26.5
DCAR_014078 Daucus carota HOM05D004912 ORTHO05D006144 3.8e-19 100.1 259 30.5
ATR1134G033 Amborella trichopoda HOM05D004912 ORTHO05D006144 1.1e-18 98.6 191 33.5
Hma1.2p1_0009F.1_g005990 Hydrangea macrophylla HOM05D004912 ORTHO05D006144 1.9e-18 97.8 328 27.4
SEGI_22716 Sequoiadendron giganteum HOM05D004912 ORTHO05D006144 1.9e-18 97.8 187 33.2
vmacro00991 Vaccinium macrocarpon HOM05D004912 ORTHO05D006144 1.9e-18 97.8 516 25.0
BolC6t39676H Brassica oleracea HOM05D005687 ORTHO05D007098 4.7e-17 93.2 139 43.9
Migut.N03366 Erythranthe guttata HOM05D004912 ORTHO05D006144 8.0e-17 92.4 222 32.4
Lsat_1_v5_gn_1_26081 Lactuca sativa HOM05D004912 ORTHO05D006144 6.8e-16 89.4 289 28.0
BraA07t31389Z Brassica rapa HOM05D005687 ORTHO05D007098 5.7e-15 86.3 135 43.0
SGA_v2.0_scaffold19G08943 Striga asiatica HOM05D004912 ORTHO05D006144 8.3e-14 82.4 389 27.0
Lsat_1_v5_gn_5_118600 Lactuca sativa HOM05D004912 ORTHO05D006144 1.1e-13 82.0 249 29.3
Mapoly0029s0129 Marchantia polymorpha HOM05D004395 ORTHO05D005234 7.0e-13 79.3 198 30.8
ECA247G4121 Erigeron canadensis HOM05D004912 ORTHO05D006144 3.5e-12 77.0 168 33.3
Psat7g146200 Pisum sativum HOM05D004912 ORTHO05D006144 2.3e-11 74.3 106 41.5
Migut.C01311 Erythranthe guttata HOM05D004912 ORTHO05D006144 1.9e-10 71.2 156 36.5
AagrBONN_evm.TU.Sc2ySwM_228.1722 Anthoceros agrestis HOM05D004395 ORTHO05D005234 3.3e-10 70.5 190 28.9
SMO118G0438 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 3.3e-10 70.5 260 25.4
Lalb_Chr19g0140471 Lupinus albus HOM05D004912 ORTHO05D006144 4.3e-10 70.1 103 42.7
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 1.6e-09 68.2 196 28.6
CDE08G1543 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 3.6e-09 67.0 344 25.0
Pp3c4_23110 Physcomitrium patens HOM05D004395 ORTHO05D005234 4.7e-09 66.6 262 26.3
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 8.0e-09 65.9 187 31.0
HPP92_005686 Vanilla planifolia HOM05D004912 ORTHO05D006144 1.0e-08 65.5 104 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4364 Anthoceros agrestis HOM05D004395 ORTHO05D005234 2.3e-08 64.3 188 29.3
Eucgr.K03534 Eucalyptus grandis HOM05D004395 ORTHO05D005234 3.1e-08 63.9 199 29.6
Mapoly0073s0092 Marchantia polymorpha HOM05D004395 ORTHO05D005234 4.0e-08 63.5 204 28.4
Pp3c20_10750 Physcomitrium patens HOM05D004395 ORTHO05D005234 2.0e-07 61.2 206 26.7
TAR628G1733 Trochodendron aralioides HOM05D004912 ORTHO05D006144 4.4e-07 60.1 109 38.5
Dinv10080 Davidia involucrata HOM05D004395 ORTHO05D005234 5.8e-07 59.7 197 29.9
Pp3c3_12260 Physcomitrium patens HOM05D004395 ORTHO05D005234 5.8e-07 59.7 182 26.9
Aqoxy2G02790 Aquilegia oxysepala HOM05D004395 ORTHO05D005234 1.3e-06 58.5 187 26.7
TWI75G0438 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 2.2e-06 57.8 186 27.4
Pp3c4_18020 Physcomitrium patens HOM05D004395 ORTHO05D005234 4.9e-06 56.6 117 29.1
GSVIVG01001776001 Vitis vinifera HOM05D004912 ORTHO05D006144 4.9e-06 56.6 62 45.2
PGR042G2891 Punica granatum HOM05D004912 ORTHO05D006144 6.4e-06 56.2 200 28.0


User provided reference genes

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